Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_012492.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq9745 605 5e-170 >seq9745 Length=7305 Score = 605 bits (670), Expect = 5e-170 Identities = 744/1003 (74%), Gaps = 29/1003 (3%) Strand=Plus/Minus Query 1585 AACGGCTCGGTGAGG---GTGAAGAATTCTGCATTCTTTAT-GCCCAGATCTTTTAGTGC 1640 || |||| ||||||| | ||||| ||||||| | | |||||| ||| | || Sbjct 6875 AATGGCTGGGTGAGGAATGCGAAGA---CTGCATTTATGAGAGCCCAGGACTTA-ATAGC 6820 Query 1641 TGAATTCTTTTCCTCATCCAAGTACTCTTTATATGATGATGTCGGGCCTGGATTGCAGAG 1700 || ||||| || || || | |||||||||| ||| | || ||||||||||| || Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1701 GAAGATAGTGGGAATTCCACCTTTAATTTGCATGGGCTTCCCGTACTTTGTGTTGCTTTG 1760 |||||| ||||| || || ||||||| || | |||||| ||||| || | || || Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1761 CCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCTTTAGATAGTGGGGATCGACGTC 1820 ||| || |||| |||||||||||| |||||||| || |||| ||| | ||||| |||| Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTT 6640 Query 1821 ATCAATGACGTTGTACCAGGCATCATTACTGTACACCTTTGGACTCAGGTCAAGGTGACC 1880 ||||||||||||||||||||||||||| ||||| ||||| || | ||| ||||| Sbjct 6639 ATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACC 6580 Query 1881 ACATAAATAGTTATGTGGACCCAGAGACCTGGCCCACATGGTCTTCCCTGTTCTACTCTC 1940 ||||| || || ||||| || | || || ||||| || || ||||| |||||| ||| Sbjct 6579 GCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTC 6520 Query 1941 ACCCTCTATGACTATACTGACGGGTCTCCAAGGCCGCGCAGCGGCATCCCTTACATTTTC 2000 ||| |||| |||||||| | |||| ||||| | ||| |||| | || ||||| Sbjct 6519 ACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTC 6460 Query 2001 TGATACCCAGCATTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGATAAAAAGGGAGA 2060 | |||||| || ||| || || || | | || | | |||| ||| ||||| Sbjct 6459 TTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGA 6400 Query 2061 AACAAAAACCTCTAAAGGAGGTGCA---AAAATCCTATCTAAATTAGCATTTAAATTATG 2117 |||| | | | ||| || || || ||| |||| |||||||||||||| |||| Sbjct 6399 AACATATATTGC---AGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATG 6343 Query 2118 AAATTGTAGTACATAATCTTTGGGTGCTAATTCCTTAATGA-CTCTAAGAGCCTCTGACT 2176 ||| ||| ||||||||| || | |||| |||| | ||||||| || ||| | Sbjct 6342 AAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTT 6284 Query 2177 TACTGCTTGCGTTAAGTGCTGTGGCGTAAGCGTCATTGGCTGTCTGTTGACCCCCTCTTG 2236 || | | || || ||| |||||| | ||||| || | |||||||||||||||| Sbjct 6283 TAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTG 6224 Query 2237 ------CAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCT 2290 ||||||||||||| ||||| || |||||||| || | || ||||||| ||||| Sbjct 6223 TAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCT 6164 Query 2291 CCAGATAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTG 2350 | | ||| ||||| |||| ||||| |||||| ||||||| ||||| ||||||||||||| Sbjct 6163 CGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTG 6104 Query 2351 CTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCACTGGTATTTCCCTT 2410 |||||||||||| || || || ||||||||||||||||||||||| ||| ||||||| Sbjct 6103 TTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTT 6044 Query 2411 CGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTCTCATGAAGTTCCCTGCAGACTC 2470 |||| ||||| |||||||| ||| ||||||||| || |||||| ||| ||||| | || Sbjct 6043 CGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAA-TC 5985 Query 2471 TT-ATGTATTTTTTGTTTACTGGGGTTTGTAGGTTTT--CTAATTGTGAGAGGGCTTCTT 2527 || |||||||| |||||||||||||| | |||||||| |||| |||||| ||||| | Sbjct 5984 TTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAAT--TGAGAGAGCTTCCT 5927 Query 2528 CTTTAGTTAGAGAGCATTTGGGATAAGTGAG-AAAATAGTTTT 2569 |||| || |||||||| | |||||| || || |||||| |||| Sbjct 5926 CTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8616636922680