Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_012553.1 Length=2609 Score E Sequences producing significant alignments: (Bits) Value seq9745 161 2e-36 >seq9745 Length=7305 Score = 161 bits (178), Expect = 2e-36 Identities = 285/410 (70%), Gaps = 13/410 (3%) Strand=Plus/Minus Query 1532 TGCATTCTCCTCTTTGTTGAGGAAGTCTTTATAACTAGCCCCCTCGCCTGGATTGCACAG 1591 ||| |||| |||| || || || ||||||||||| | ||||||||||| || Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1592 CACGATTGATGGTATCCCGCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTG 1651 | ||||| || ||||||||||||| || || |||||||| ||| | | || |||| Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1652 CCAGTCCCTTTGGGCCCCAATCAACTCTTTCCAATGCTTTAACTTTAGATAATGCGGAGC 1711 ||| || |||| |||||| || || || || |||| ||||| |||| ||||| | Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA------ATAACGCGGATC 6646 Query 1712 GACATCATCAATGACGTTATACTCAACGTCATTTGAGTAAACCCTAGAATTGAAATCGAG 1771 || | |||||||||||| ||| | ||||| ||| | | | | ||| Sbjct 6645 AACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATA 6586 Query 1772 ATGCCCAC-TAAGATAATTATGTGGGCCTAAAGCTCTAGCCCACATGGTCTTTCCCGTTC 1830 ||| || | |||| ||||| ||||||||||| | ||||||||| || || || || |||| Sbjct 6585 ATGACCGCATAAG-TAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTC 6527 Query 1831 GACTATCCCCCTCGACTACAATACTAATAGGTCTCTCTGGCCGCGCAGCGGCACCCCTTC 1890 | || || || || || ||||| ||||||| | |||| | ||| |||| || Sbjct 6526 TAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCA---CTCA 6470 Query 1891 CAAAATAAACATCAGCCCACTCTTGCA-AATCGTCCGGGACATTGTTAAA 1939 ||| | | ||| |||| ||||| | |||| ||||| || |||||||| Sbjct 6469 CAACGTTTTCTTCAACCCAGTCTTGAAGAATC-TCCGGTACGTTGTTAAA 6421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8163296569500