Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_012665.1 Length=2743 Score E Sequences producing significant alignments: (Bits) Value seq9745 601 6e-169 >seq9745 Length=7305 Score = 601 bits (666), Expect = 6e-169 Identities = 719/974 (74%), Gaps = 8/974 (1%) Strand=Plus/Minus Query 1590 CGAAGATCGCATTCTTGAGAGCCCAGTTTTTTAGTGCGGTGTTCTTTTCCTCGTCCAGGA 1649 |||||| ||||| ||||||||||| || | || | |||||| || ||||| || | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1650 ATTCTTTATAACTGCTGTTGGGACCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTT 1709 | ||||||||||| |||||| || |||||||| ||||||||||| || || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1710 TAATTTGAACTGGCTTCCCGTATTTTGTGTTGGACTGCCAGTCCCTTTGGGCCCCCATGA 1769 ||| || || ||||| |||||| || | || ||||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1770 ACTCTTTAAAGTGCTTGAGGAAATGCGGATCGACGTCATCAATGACGTTATACCAAGCGT 1829 | || ||||| || || | || ||||||| |||| |||||||||||| ||||| || | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1830 CGTTGCTGTAGACTTTGGGACTTAGGTCTAGATGGCCACACAAATAGTTATGTGGACCTA 1889 | ||| |||| ||| || |||| || ||| || || || || || ||||| |||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1890 GTGACCTCGCCCACATCGTCTTCCCGGTCCGACTATCTCCCTCAATAACTATACTTTGAG 1949 ||| || ||||| || || ||||| || | | || || || | ||||||||| || Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1950 GTCTCAGGTGCCGCGCAGCGGCGTCGACAACGTTCTCGGACGCCCACTCTTCAAGTTCTT 2009 ||| | ||| | ||| ||| |||||||| || |||| |||| ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2010 CTGGAACTTGATCGAAAGAAGAAGATAAAAAAGGAGAAACATAAACCTCCAATGGAGGTG 2069 | || || | | || | | |||| ||||||||||||||| | | ||||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2070 TAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAATACATAATCTTTAGGGG 2129 || ||| |||| |||||||||||||| ||||||| |||| ||||||||| ||| Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2130 CTAGTTCCCTAAGTA-CTCTAAGAGCCTCTGGCTTACTGCCTGTGTTAAGTGCTGCTGCG 2188 | |||||||| || ||||||| || ||| ||| || | || || ||| ||||| Sbjct 6316 GTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG 6258 Query 2189 TAAGCGTCGTTGGCTGATTGTTGCCCCCCTCTAG------CAGATCGTCCGTCGATCTGA 2242 ||| | || || || |||||||| |||||||| | |||||| ||| || ||||| Sbjct 6257 TAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGG 6198 Query 2243 AACTCTCCCCATTCAAGGATGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCTGAGCTT 2302 || |||||||| |||| | ||||||| ||| ||||| || ||||| |||| ||||| Sbjct 6197 AATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTG 6138 Query 2303 GATTTAGCTCCCTGAATATTTGGATGGAAATGTGCTGACCTGTGTGGGGAGACCAGGTCG 2362 |||||| ||||||| || |||||||||||||||| ||||||| ||| ||||| || ||| Sbjct 6137 GATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCG 6078 Query 2363 AAGAATCGCTTATTCTTGCACTGGTATTTCCCCTCGAATTGGATGAGCACGTGTAGATGA 2422 ||||||| |||||| |||| ||| ||||| ||||||||||| |||||||| ||| || Sbjct 6077 AAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGA 6018 Query 2423 GGTTCCCCATTTTCGTGAAACTCTCTGCAGATCTTGATGTATTTTTTGGATGTTGGGGTT 2482 ||||||| ||||| ||| |||||||| |||||||||||||| ||| | |||||| Sbjct 6017 GGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTA 5958 Query 2483 TGTAGGTTTTGGAGTTGGGAAAGTGCTTCCTCCTTTGTAAGGGAGCATTTTGGGTAAGTG 2542 | ||||||||| | || || |||||||| |||||||| ||||| | || || || Sbjct 5957 TTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTT 5898 Query 2543 AGGAAATAATTTTT 2556 || ||| |||||| Sbjct 5897 AGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8588105012340