Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_012786.1 Length=2672 Score E Sequences producing significant alignments: (Bits) Value seq9745 215 9e-53 >seq9745 Length=7305 Score = 215 bits (238), Expect = 9e-53 Identities = 629/957 (66%), Gaps = 45/957 (5%) Strand=Plus/Minus Query 1556 TGCGTTTTCCTCTTTGTCGAGGAAGTCTTTATAGCTGGACCCTTCCCCTGGATTACAGAG 1615 |||||| | |||| ||| || || |||||||| || || |||||||| || || Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1616 CACGATTGAAGGAACTCCACCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGGACTG 1675 | ||||| || | || ||||||| || || |||||||||||| | | || |||| Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1676 CCAGTCCCTTTGGGCCCCAATGAGTTCCTTCCAGTGCTTCATTTTCAGATAATGTGGGCT 1735 ||| || |||| |||||| |||| |||||| | || ||| | |||| | || Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATG------TTTTAAATAACGCGGATC 6646 Query 1736 AATGTCATCAATGACGTTATATTCCACG--TCATTTGAATAAACCCTGGAATTGAAATCC 1793 || || |||||||||||| || ||| | ||||| || | | | | ||| Sbjct 6645 AACGTTATCAATGACGTTGTA--CCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCA 6588 Query 1794 AAGTGTCCAC-TAAGATAATTATGGACTCCTAATGAACGAGCCCACATTGTCTTCCCCGT 1852 | || || | |||| ||||| || |||||||| | |||||| ||||| ||||| || Sbjct 6587 TAATGACCGCATAAG-TAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGT 6529 Query 1853 TCGACTATCACCCTCGATGATAATACTAATAGCTCGTTCAGGCCGCGCAGCGGCA-TCAA 1911 || | ||||| || | | ||||| |||| ||| | ||||| | ||| |||| ||| Sbjct 6528 TCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCA- 6470 Query 1912 GCCCAAAATATGAATCAGCCCACTCTTGCATCTCCTCTGGAACAAGAGTGAATGA---GG 1968 ||| | | ||| |||| ||||| | ||| || || | |||| || Sbjct 6469 ---CAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGG 6413 Query 1969 AGAGGGGAAACGGAGGAACAAACGGTTC---TGGAGCCTTTTGAAAAATGCGTTCTAAAT 2025 | | ||| |||| |||| | | | |||||||| | || || || |||| Sbjct 6412 ATAC---AAAAGGAGAAACATATATTGCAGGTGGAGCCT---GGAATATCATATCCAAAT 6359 Query 2026 TTGAACGGATATTATGATGTTGAAGGACAAAATCTTTGGGTTGTTCCTCTCTCAGTATAT 2085 | | | | ||||| | | | ||||||| || ||| || || | ||| | Sbjct 6358 TAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCT 6299 Query 2086 TGAGGGCCTCCATGACTGATCCTGAATTGAGGACCTTGGCATACGTGTCGTTGGCAGATT 2145 | ||| | | || || ||||| ||| | | || || || || || |||| Sbjct 6298 CTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATT 6239 Query 2146 GCTGACCTCCTCTAG------CAGATCTGCCGTCGATTTGGAAAATTCCATGATCAATGA 2199 | ||||| ||||| | ||||||| || || || ||||| ||| |||||| Sbjct 6238 GTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTG 6179 Query 2200 AGTCTCCGTCTTTCTCCACATAGGTCTTGACGTCTGAAGAGCTC---TTAGCTCCCTGAA 2256 ||||||| ||||| | ||| | ||| |||| | ||||| ||| ||||||| | Sbjct 6178 TATCTCCGTGCTTCTCGATATACGACTTCACGT---AGGAGCTGGATTTACCTCCCTGTA 6122 Query 2257 TGTTCGGATGGAAATGTGTTGACCTAGTTGTGGAGACGAGGTCGAAGAATCTGTTATTTT 2316 |||| |||||||||||||||||||| |||| ||||| || ||||||||||||||||| Sbjct 6121 TGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCG 6062 Query 2317 GGCAATTGTATTTGCCTTCGAATTGGATGAGCACATGGAGGTGAGGTTGCCCATCTTCGT 2376 ||| |||| || |||||||||||||| ||||| ||||| |||||| || | ||| | Sbjct 6061 TGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCAT 6002 Query 2377 GTAGTTCTCTCGAGACACGAATGAATTTTTTATTGGTTGGTGTTTCAAG--AGCAAGTAA 2434 | |||||| | | ||| |||| || || ||| || | || | ||| Sbjct 6001 GAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAA 5942 Query 2435 TTGGGAAAGTGCCTCTTCTTTGGAGAGAGAGCATTTAGGATAAGTAAGGAAAAAATT 2491 || || || || || ||||| | |||||||| | ||||| || || |||| ||| Sbjct 5941 TT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATT 5887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8363019941880