Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_013017.1 Length=2386 Score E Sequences producing significant alignments: (Bits) Value seq9745 517 2e-143 >seq9745 Length=7305 Score = 517 bits (572), Expect = 2e-143 Identities = 695/958 (73%), Gaps = 16/958 (2%) Strand=Plus/Minus Query 1276 GCCCAGGATTTGAGATGTGCGTTCTTCTCCTCGTCTAAATAGTCTTTATATGAGGAATTT 1335 |||||||| || | | ||||||||| || ||||| | | | |||||||| || || Sbjct 6836 GCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTG 6777 Query 1336 GGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCGCCTTTAATTTGAACCGGTTTCCCG 1395 || ||||||||||| ||||||||||| || || |||||||||| || || || || ||| Sbjct 6776 GGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCG 6717 Query 1396 TATTTTGTGTTGCTTTGCCAGTC-CTTTTGTGCACCCATGAACTCCTTAAAGTGTTTCAG 1454 ||| || | || ||||| || |||||| || |||||||| |||||||| ||||| | Sbjct 6716 TATCTTCTATTATACTGCCAATCACTTTTG-GCCCCCATGAATTCCTTAAAATGTTTTAA 6658 Query 1455 ATAATGCGGGTCAACATCATCTATGACGTTATACCATGCGTCATTACTGAACACCTTTGG 1514 |||| |||| ||||| | ||| |||||||| ||||| || ||||| || || ||||| Sbjct 6657 ATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGG 6598 Query 1515 GCTCAGATCAAGATGGCCGCACAGATAATTATGAGGCCCAAGACTTCTGGCCCATACGGT 1574 ||| | |||| ||| ||||| | ||||| || || || | ||| ||||||| || Sbjct 6597 GCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGT 6538 Query 1575 CTTCCCTGTTCTGCTTTCTCCTTCAATCACTATACTAATCGGTCTACCTGGCCGCGCAGC 1634 ||||| ||||| || ||||| | |||||||| || |||| |||| | ||| Sbjct 6537 TTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGA 6478 Query 1635 GGC-CTCAACGACGTTCTCCGCCGCCCATTCTTCAAGTTCTTCTGGAACTTGGTCGAACG 1693 ||| |||| | ||||| || | |||| |||| ||| || || || | || || | Sbjct 6477 GGCACTCA-CAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATG 6419 Query 1694 AAGAAGACAAAAAAGGAGAAACATAAGGAGCTGGAGGCTCCTGAAAAATCCTATCTAAAT 1753 | || | ||||||||||||||| || || || |||| || ||| |||| |||| Sbjct 6418 TACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAAT 6359 Query 1754 TATTAATTAAATTATGATATTGTAAAACAAAATCTTTGGGAGCTAACTCCCTTA-TAACC 1812 || | |||| ||||| | ||||| | ||||||| || | ||||| | || | Sbjct 6358 TAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCT 6299 Query 1813 CTAAGAGCCTCTGTCTTACTCCCTGCGTTAAGCGCTGCGGCGTAAGCGTCATTGGCTGTC 1872 ||||| || |||| ||| ||| | || || ||| | |||||| | ||||| || | Sbjct 6298 CTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGAT 6240 Query 1873 TGTTGGCCTCCTC------TGGCAGATCTTCCGTCGATCTGGAATTCTCCCCATTCGAGT 1926 ||||| || |||| | ||||||||||| || ||||||||||||||||| || | | Sbjct 6239 TGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATT 6180 Query 1927 GTGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGACTTAGCTCCCTGAATG 1986 || ||||| | ||| ||||| || ||||| |||| ||||||||| ||| ||||||| ||| Sbjct 6179 GTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATG 6120 Query 1987 TTTGGATGGAAATGTGCTGACCTATTTGGGGAGACCAGGTCGAATAGTCTCTGATTTTGG 2046 |||||||||||||||| |||||| |||| ||||| || ||||| | ||| | ||| | Sbjct 6119 TTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTG 6060 Query 2047 CACTTGAACTTCCCTTCGAATTGGAGAAGCACATGCAGATGAGGTTGGCCATCCTCGTGA 2106 || || |||||||||||||||||| |||||| || ||| |||||| | | || ||| Sbjct 6059 CATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGA 6000 Query 2107 AGCTCTCTGCAAATCTTGATGTATTTTTTGTTTGATGCTGTACTTA--TTTGCTGGAGTT 2164 ||||||||||||||||||||||| |||||| || ||| ||| ||| | || Sbjct 5999 GCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT 5940 Query 2165 GCTCTAGGGCTTCCTCTTTGCTTAGAGAACATTTTGGGAAAGTTAGGAAAAAATTCTT 2222 | || ||||||||||| | ||||| || | || | ||||| |||| ||| || Sbjct 5939 G--AGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7456339235520