Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_013019.1 Length=2774 Score E Sequences producing significant alignments: (Bits) Value seq9745 583 2e-163 >seq9745 Length=7305 Score = 583 bits (646), Expect = 2e-163 Identities = 707/960 (74%), Gaps = 24/960 (3%) Strand=Plus/Minus Query 1666 TTTTTCTCTTCATCCAAGAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAG 1725 || || ||||| || | ||||||||||| ||||||||||||||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1726 ATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAG 1785 || ||||| || |||||||||| || || |||||||||||| | | || ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1786 TCCCTTTGGGCCCCGATGAATTCCTTAAAGTGCTTGAAATAATCCGGATCAACGTCATCA 1845 || |||| |||||| |||||||||||||| || || |||||| ||||||||||| |||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1846 ATGACGTTGTACCACGCATCATTATTGTAGACCTTAGGACTAAGGTCAAAGTGACCACAC 1905 |||||||||||||| |||||||| ||||| || || || | ||| | ||||| || Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1906 AGGTAATTATGTGGACCCAAAGACCTAGCCCACGTGGTCTTCCCCGTTCTACTATCACCC 1965 | |||||| ||||| || || || |||||||| | || ||||| |||||| ||||| Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1966 TCTGTGACAATACGCTTGGGTCTGAAAGTCCGCGCAGCGGCACACACCACTTTCTCAGCA 2025 ||| || |||| | | |||| | || || | ||| ||||| ||| || || || || Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 2026 GCCCATTCTTCAAGTTCCTCTGGAACTTGGTCAAAAGNNNNNNNNNNNNNNNNNGAAA-- 2083 |||| |||| ||| ||| || || | || ||| | |||| Sbjct 6455 ACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACA 6396 Query 2084 TATATTCCTCGATAGGAGGAGTA---AATATTCTATCAAAATTAGCAGATAGATTATGAA 2140 |||||| | ||| |||| ||||| |||| ||||||||| || |||||| Sbjct 6395 TATATTGC-----AGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAA 6341 Query 2141 ATTGTAATACACAATCTTTAGGTGCTGATTCCTGCAAGA-CTGTAAGAGCCTCTGACGTA 2199 | |||| | ||||||| || | |||| | | || |||| || ||| || Sbjct 6340 AACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTA 6282 Query 2200 CTGCCTGCGATAAGTGCTGCGGCGTAAGCGGCATTGGCTGTCTGTTGACCCCCTCTTG-- 2257 || | | || ||| | |||||| | |||| || | |||||||||||||||| Sbjct 6281 GACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTA 6222 Query 2258 ----CAGATCTTCCATCGATCTGAAACTCTCCCCCAGTCGAGGGTGTCTCCCGTCCTTCT 2313 ||||||||||||| ||||| || ||||||| | || | || ||||| || ||||| Sbjct 6221 GTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAA-TCAATTGTATCTCC-GTGCTTCT 6164 Query 2314 CCAGGTAGGACTTGACGTCCGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTG 2373 | | || ||||| |||| ||||| |||||| ||||||| ||||| ||||||||||||| Sbjct 6163 CGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTG 6104 Query 2374 CTGATCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCTGGCACTTGTATTTCCCCT 2433 ||| |||||||| || || || |||||||||||||||||| ||| |||| ||||| | Sbjct 6103 TTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTT 6044 Query 2434 CGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCAAGAAGCTCTCTGCAGATCT 2493 |||| ||||| |||||||| ||| ||||||||| |||||| || |||||||| |||| Sbjct 6043 CGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCT 5984 Query 2494 TGATGTATTTTTTATTTGTTGGGGTTTGTAGGTTTTGAA--ATTGGGAAAGTGCTTCCTC 2551 |||||||||| || ||| |||||| | ||||||||||| |||| || || ||||||| Sbjct 5983 TGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTC 5926 Query 2552 TTTAGTAAGAGAGCATTTCGGATAAGTGAGAAAATAATTTTTAGAGTTAATGAGGAAACG 2611 ||| ||||||||||| | ||||| || |||||| ||||||||| |||| | ||||| Sbjct 5925 TTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8686381592400