Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_013022.2 Length=2791 Score E Sequences producing significant alignments: (Bits) Value seq9745 302 8e-79 >seq9745 Length=7305 Score = 302 bits (334), Expect = 8e-79 Identities = 475/674 (70%), Gaps = 16/674 (2%) Strand=Plus/Minus Query 1712 TCCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1771 |||||||||||| |||||||| ||||| || || ||||||| || || ||||||||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1772 TTTACAATTGCTTTGCCAGTCCTTCTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGGTA 1831 | | | ||| ||||| || | | |||||||||||| || ||||| || |||| || Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATA 6655 Query 1832 TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACCTTTGGACT 1891 | || | |||| |||||||||||| ||||| ||| ||| | ||| ||||| || Sbjct 6654 ACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCT 6595 Query 1892 CAGGTCCAAATGCCCACACAGATAATTATGTGGTCCTAAGGATCTAGCCCAAACTGTTTT 1951 | || |||| || || | ||||| ||||| ||||| ||||||||||| | |||||| Sbjct 6594 TATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTT 6535 Query 1952 ACCTATTCTACTTGGCCCTTCTATAACTATACTTATGGGCCTCTCTGGCCGCGCAGCGGC 2011 || ||||| ||||||| ||||||||| || || | | |||| | ||| ||| Sbjct 6534 CCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGC 6475 Query 2012 ATCCATGACATTCTCAGCAGCCCAATCGCTGATAATGTCAGGAACATTATTGAAAGAAGA 2071 | || || || || || |||| || | ||| || || || || || | | | Sbjct 6474 ACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTT---AAATGT 6418 Query 2072 AATGGA---AAAAGGTGAAGAATATACAGAAGGAGGAGGAGAAAATATCCTATCTAAATT 2128 | |||| |||||| ||| ||||| | ||| |||| |||||| |||| ||||| Sbjct 6417 ACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATT 6358 Query 2129 GCTAACTAAATTATGATATTG-AAATATAAATTTTTCAGGGAGTTTCTCCCTGATTATTT 2187 | ||| ||||| | | ||||| ||| ||| ||| |||| ||||| ||||| | Sbjct 6357 AGCATTTAATCTATGAAAACGTAAATAATAATCTTT-TGGGCGTTTTTCCCTAATTATCT 6299 Query 2188 GTAACGCAGCTTCTTTAGAACCTGCGTTTAATGCCTCTGCGGCAGCGTCGTTAGCAGTCT 2247 ||| || ||| |||||| || | |||| || |||||| | | || ||||| | | Sbjct 6298 CTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATT 6239 Query 2248 GCTGGCCTCCTC------TAGCAGATCTGCCGTCGATCTGGAATTCACCCCAGTCGA-GG 2300 | || || |||| | |||||||| || || ||||||||||| ||||| || | | Sbjct 6238 GTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTG 6179 Query 2301 TAGTCTCCGTCCTTCTCGATGTATGACTTGACATCCGAGGAGGACTTAGCTGCCTGGAAA 2360 || ||||||| ||||||||| || ||||| || | ||| ||| ||| || |||| | Sbjct 6178 TA-TCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATG 6120 Query 2361 TTTGGATGGAATTG 2374 ||||||||||| || Sbjct 6119 TTTGGATGGAAATG 6106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8734690429400