Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_013102.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq9745 457 2e-125 >seq9745 Length=7305 Score = 457 bits (506), Expect = 2e-125 Identities = 689/978 (70%), Gaps = 17/978 (2%) Strand=Plus/Minus Query 1600 CGAAGATCGCATTTTTTATTGCCCAGTGTTTGAGTGCGCTGTTTTTCTCTTCGTCCAAGA 1659 |||||| |||||| | | |||||| || | || ||| || |||||||| | | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1660 ATTCTTTATAGCTTGAATTGGGGCCGGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTT 1719 | |||||||| ||||| ||||| || |||||||| |||||||| ||||| || || |||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1720 TAATTTGAACGGGTTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGA 1779 ||| || || ||| |||||||| || | || ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1780 ATTCTTTAAAATGCTTTAGGTAGTGCGGATCAACGTCATCAATGACGTTGTACCAGGCAT 1839 |||| |||||||| |||| || |||||||||||| ||||||||||||||||||||||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1840 CATTACTGTACACCTTTGGACTCAAATCAAGATGACCACACAGATAATTGTGTGGACCCA 1899 |||| ||||| ||||| || | |||| |||||| || | ||||||||||| || | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1900 ATGATCGAGCCCACATCGTCTTCCCCGTCCGACTATCGCCCTCTATGACTATACTTATTG 1959 |||||| |||||| || || ||||| || | | || || |||| |||||||| || | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1960 GTCGTAATGGCCGCGCAGCGGCACTGACAACGTTCTCTGCAGCCCACTCTTCGAGTTCTT 2019 |||| |||| | ||| |||||| |||||||| ||| || |||| |||| || | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2020 CTGGAACTCGATCAAACGAAGAGGAAGAAAAAGGAGAAACGTAAACCTCCATTGGAGGAG 2079 | || || | ||| | | ||| |||||||||||| || | | ||||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2080 TAAAAATCCTATCTAAATTACNNNNNNNNTTATGAAACTGTAAAACAAAATCTTTGGGAG 2139 || ||| |||| |||||| ||||||| ||||| | ||||||| || Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2140 CTTTCTCCCTTAATATATTGAGGGCCGTAGCTTTGGACCCTGAATTGATTGCCTCGGCAT 2199 ||| ||||| | ||| | | ||| | | ||| ||||| ||||| | || || || | Sbjct 6316 GTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2200 ATGCGTCGTTTGCAGACTGGCAACCTCCTC------TAGCCGATCTTCCATCGATCTGGA 2253 | | || || || || || ||| |||| | || ||||||||||| ||||||| Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2254 AAACTCCATGATCAAGCACGTCTCCGTCTTTGTCCATGTAGGCTTTGACGTCTGTTGAGC 2313 | |||| ||||| ||||||| || || || || | || |||| |||| Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT---AGGAGC 6140 Query 2314 T---TTTAGCGCTCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACGAGAT 2370 | |||| | | ||| ||||| ||||||||||||| |||||||||||| || || |||| Sbjct 6139 TGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGAT 6080 Query 2371 CGAAGAATCTGTTGTTTTGGCATTTGAATTTTCCTTCGAACTGGATGAGGACATGCAGGT 2430 ||||||||||||| || |||| || | || |||||||| ||||| || || || || Sbjct 6079 CGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGAC 6020 Query 2431 GAGGAGACCCATCTTCGTGTAATTCCCTGCAGATTCGAATGAATAATTTATTGGTTGGTG 2490 |||| || | ||| || ||| ||||| || ||| || || || ||| | Sbjct 6019 GAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGG 5960 Query 2491 TCGTTAGGGCT--AAAAATTGGGAAAGTGCTTCTTCTTTGCTTAGTGAGCAATGTGGGTA 2548 | ||||| | || |||| || || ||||| ||||| | || ||||| || || || Sbjct 5959 TATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATA 5902 Query 2549 TGTGAG-GAAATAGTTTT 2565 ||| || ||||| |||| Sbjct 5901 TGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8603956073640