Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_013413.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq9745 307 2e-80 >seq9745 Length=7305 Score = 307 bits (340), Expect = 2e-80 Identities = 536/772 (69%), Gaps = 12/772 (2%) Strand=Plus/Minus Query 1580 ATAATGGCTCGTTGAGGTAGATGAAGGTTGCATTTTTTGTAGCCCAGTCTTTTAGTGCTT 1639 ||||||||| | ||||| | |||| ||||||| | ||||||| || | ||| Sbjct 6877 ATAATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTG 6818 Query 1640 TAtttttttCTTCTTCCAGATATTCTTTATATGAAGAAGATGGG-CCTGGATTGCAGAGG 1698 || || ||||| || ||| | |||||||| || | |||| ||||||||||| ||| Sbjct 6817 CGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAAAGG 6759 Query 1699 AAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCGTACTTTGTGTTGCTTTGC 1758 ||||| ||||| || || ||||||| || || ||||||||||| || | || ||| Sbjct 6758 AAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGC 6699 Query 1759 CAATCCCTCTGGGCCCCCATGAACTCTTTAAAGTGTTTTAGGTAATGCGGGTCGACGTCA 1818 ||||| || | |||||||||||| || ||||| ||||||| ||| |||| || |||| | Sbjct 6698 CAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTA 6639 Query 1819 TCAATGACGTTATACCAAGCATCATTGCAATACACCTTTGGACTAAGATCAAGATGGCCG 1878 ||||||||||| ||||| ||||||||| ||| ||||| || | |||| ||| ||| Sbjct 6638 TCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCG 6579 Query 1879 CACAAGTAATTATGCCTACCAAGAGATCTTGCCCACATGGTTTTACCAGTTCTAGAAGCA 1938 || |||||||| || || | ||||| ||||| || ||||| |||||||||| || Sbjct 6578 CATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCA 6519 Query 1939 CCTTCAATCACAATACTTATGGGCCTCCATGGCCGCGCAGCGGCGTCAACAACATTTTCT 1998 ||||| | || ||||| || || | |||| | ||| ||| ||||| |||||| Sbjct 6518 CCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCT 6459 Query 1999 TTTGCCCACTGTTCCAATATATGAGGAACATTATCAAATGAATCTCGA-CTAAATGGAGT 2057 | |||| | || | || | || || || | ||||| | || || ||| |||| Sbjct 6458 TCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTA-CTGGATACAAAAGGAGA 6400 Query 2058 GACATAAATTTGTTGTTGTGGTTTAAAGAGTTTATCTAGATTTGCATTTAAATTATGAAA 2117 ||||| ||| || | | | || | |||| | ||| |||||||| ||||||| Sbjct 6399 AACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAA 6340 Query 2118 TTG-AAATAGAAAGTCTCTGGGAAGTTTCTCTCTAATGATGTTCAAAGCTTCCCCTTTGG 2176 | ||||| | | ||| | || |||| || ||||| || | || ||| | ||| | Sbjct 6339 ACGTAAATA-ATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAG 6281 Query 2177 AAGCAGCATTTAAAGCAGCTGCCACAACATCGTTTGCTGCCTGTTGACCTCCTC------ 2230 | ||| ||||| || |||| |||||| || || | |||||||| |||| Sbjct 6280 ACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAG 6221 Query 2231 TAGCAGATCTTCCATCGATCTGAAAACAACCCCAGTCGAGGTAATCGCCGTCCTTCTGAA 2290 | |||||||||||||| ||||| || ||||| || | ||| |||| ||||| | Sbjct 6220 TTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGA 6161 Query 2291 TGTACGACTTGATATCGGACGAAGATCTTGCTCCCTGAAAATTGGGGTGGAA 2342 | |||||||| | | ||| ||| | ||||||| | || || ||||| Sbjct 6160 TATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAA 6109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8613466710420