Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_013414.1 Length=2733 Score E Sequences producing significant alignments: (Bits) Value seq9745 219 7e-54 >seq9745 Length=7305 Score = 219 bits (242), Expect = 7e-54 Identities = 250/336 (74%), Gaps = 0/336 (0%) Strand=Plus/Minus Query 1661 TCCTCGTCGAGGAACTCTTTATATGACGATTTCGGTCCTTGATTACAGAGAAAGATGGTG 1720 || ||||| || ||||||||||| || || |||||| |||| || || ||||| ||| Sbjct 6809 TCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTG 6750 Query 1721 GGGATACCACCTTTAATTTGTGTGGGCTTTCCGTATTTGACGTTACTTTGCCAGTCACGT 1780 || || || ||||||| || ||||||||||||| | ||| ||||| |||| | Sbjct 6749 GGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTT 6690 Query 1781 TGTGCGCCCATGAATTCTTTGAAATGTTTCAAATAATGCGGATCGACGTCATCAATGACG 1840 | || ||||||||||| || |||||||| |||||| ||||||| |||| |||||||||| Sbjct 6689 TTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACG 6630 Query 1841 TTATACCATGCATCGTTGGAATACACTTTCGGACTAAGGTCCAAATGGCCGCAAAGATAA 1900 || ||||| ||||| ||| ||| ||| || || | || |||| ||||| | ||| Sbjct 6629 TTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAA 6570 Query 1901 TTGTGCGGCCCTAATGCACGAGCCCATGTCGTCTTACCAGTACGACTATCTCCTTCAATG 1960 ||||| || ||||||| | ||||||| | || || ||||| | | || ||||| | Sbjct 6569 TTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACA 6510 Query 1961 ACTATACTAATAGGTCTCTCCGGCCGCGCAGCGGCA 1996 |||||||| ||||||| | |||| | ||| |||| Sbjct 6509 ACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCA 6474 Score = 100 bits (110), Expect = 5e-18 Identities = 176/254 (69%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 2254 TCCATCGATTTGAAATTCTCCATGATCAAGGACGTCTCCGTCTTTCTCCATGTATTTCTT 2313 |||||| || || |||||||| ||||| ||||||| ||||| || || ||| Sbjct 6210 TCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTT 6151 Query 2314 AACATCCGAACTGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGCCCTGGTTTC 2373 || | || ||| ||| ||||||| ||||| |||||||||||||||| ||||| || Sbjct 6150 CACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGG-TTG 6092 Query 2374 GGCATGTAAG-TCGAAGAACCGTTGGTTTCTACACTGGAACTTTCCTTCGAATTGAAGCA 2432 | | ||| |||||||| | | || | || | |||| ||||||||||| | | Sbjct 6091 GAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAA 6032 Query 2433 GAACATGTAAGTGAGGAACCCCATCTTCATGAAGCTCTCTGCAAATGCGAATAAACTTCT 2492 | || || | |||| ||| | ||||||| ||||||||||| || | |||| Sbjct 6031 GCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCT 5972 Query 2493 TGTTAACAGGAGTA 2506 |||| || || ||| Sbjct 5971 TGTTTACTGGGGTA 5958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8556402889740