Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_013465.1 Length=2807 Score E Sequences producing significant alignments: (Bits) Value seq9745 226 5e-56 >seq9745 Length=7305 Score = 226 bits (250), Expect = 5e-56 Identities = 446/671 (66%), Gaps = 10/671 (1%) Strand=Plus/Minus Query 1728 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1787 |||||||||||| |||||||| ||||| || || ||||||| || || ||||| ||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1788 TTTACAGTTTGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1847 | | | || | ||||| || | | ||||||||||||||||||||| || |||| || Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATA 6655 Query 1848 TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATACTTTTGGGCT 1907 | || | |||| |||||||||||| ||||| ||| ||| |||| ||||||||| Sbjct 6654 ACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCT 6595 Query 1908 TAGATCTAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCACACTGTTTT 1967 || ||| |||| || || || |||||||| ||||| || || || ||||| | |||||| Sbjct 6594 TATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTT 6535 Query 1968 GCCTATTCT-GCTTGGGCCTTCAATAACAATTGATATAGGTCTATCCGGCCGCGCAGCGG 2026 || |||| || | ||||| | ||| || ||||||| | |||| | ||| || Sbjct 6534 CCCAGTTCTAGCCT-CACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGG 6476 Query 2027 AATCCATGACATTTTCAGCGGCCCAATCGCTGATAATGTCAGGAACATTATTGAAAGNNN 2086 | || || ||||| | |||| || | ||| || || || || || || | Sbjct 6475 CACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTAC 6416 Query 2087 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTATCTAAATTTG 2146 || |||| ||||| | Sbjct 6415 TGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAG 6356 Query 2147 AAACTAAATTATGATATTGAAAAATATATTTTTCAGGGAGTTTCTCCCTTATTATTTGTA 2206 | ||| ||||| | | ||| ||| | || ||| |||| ||||| ||||| | || Sbjct 6355 CATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTA 6296 Query 2207 ACGCAGCTTCTTTAGAACCTGCGTTTAATGCCTCTGCGGCAGCGTCGTTAGCAGTCTGCT 2266 | || ||| |||||| || | |||| || |||||| | | || ||||| | || | Sbjct 6295 AGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTT 6236 Query 2267 GACCTCCTC------TAGCAGATCTGCCGTCGATCTGGAATTCACCCCAGTCGA-GGTAG 2319 |||| |||| | |||||||| || || ||||||||||| ||||| || | ||| Sbjct 6235 GACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTA- 6177 Query 2320 TCTCCGTCCTTCTCGATGTATGACTTGACATCCGAGGAGGACTTAGCTGCCTGGAAATTT 2379 ||||||| ||||||||| || ||||| || | ||| ||| ||| || |||| | ||| Sbjct 6176 TCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTT 6117 Query 2380 GGATGGAATTG 2390 |||||||| || Sbjct 6116 GGATGGAAATG 6106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8785399807800