Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_013467.1 Length=2814 Score E Sequences producing significant alignments: (Bits) Value seq9745 416 5e-113 >seq9745 Length=7305 Score = 416 bits (460), Expect = 5e-113 Identities = 628/898 (70%), Gaps = 21/898 (2%) Strand=Plus/Minus Query 1729 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1788 |||||||||||| |||||||| ||||| || || ||||||| || || ||||| ||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1789 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTTAAGTA 1848 | | | || | ||||| || | | ||||||||||||||||||||| || ||||| || Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATA 6655 Query 1849 TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGTATACTTTTGGGCT 1908 | || | |||| |||||||||||| ||||| ||| |||| |||| ||||||||| Sbjct 6654 ACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCT 6595 Query 1909 TAAATCTAAATGCCCACATAAATAGTTATGTGGGCCCAATGACCTGGCCCATACTGTTTT 1968 || ||| |||| || ||||| || || |||||||| ||||| || ||||||| |||||| Sbjct 6594 TATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTT 6535 Query 1969 GCCGATTCT-GCTTGGGCCTTCAATAACTATGGATATGGGTCTATCCGGCCGCGCAGCGG 2027 || |||| || | ||||| | |||||| || |||| | |||| | ||| || Sbjct 6534 CCCAGTTCTAGCCTCA-CCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGG 6476 Query 2028 AATCCATGACATTTTCAGCGGCCCAGTCGCTGATAATGTCAGGAACGGCATTGAAAGNNN 2087 | || || ||||| | ||||||| | ||| || || ||| || || | Sbjct 6475 CACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTAC 6416 Query 2088 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTATCTAAATTAC 2147 || |||| |||||| Sbjct 6415 TGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAG 6356 Query 2148 CACATAAGTTGTGGTATTGAAAA--ATAAATTTCTCAGGTAGTTTTTCCCTGATGATTTG 2205 || ||| | || | | ||| |||| || | || |||||||||| || || | Sbjct 6355 CATTTAATCTATGAAAACGTAAATAATAATCTTTT--GGGCGTTTTTCCCTAATTATCTC 6298 Query 2206 TAAGGCCGCTTCTTTGCTGCCTGAATTTAAGGCCTCTGCTGCTGCGTCATTAGCAGTCTG 2265 |||||| ||| ||| || ||||||| ||| ||||| | |||||||| | || Sbjct 6297 TAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTG 6238 Query 2266 CTGGCCTCCTCTAG------CAGATCTGCCGTCGACCTGGAACTCACCCCATTCAATTGT 2319 || || ||||| | ||||||| || || | |||||| || ||||| |||||||| Sbjct 6237 TTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGT 6178 Query 2320 GTCACCGTCCTTATCGACGTAGGACTTGACATCGGAGCTGGATTTAGCTCTCTGGATATT 2379 || |||| ||| |||| || ||||| || | ||||||||||||| ||| ||| || || Sbjct 6177 ATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTT 6118 Query 2380 AGGGTGAAAGTGTGATGACCTTGATGGGGAAACAAGGTCGAAGAATCTCTGATTCGTGCA 2439 || || || |||| |||||| | ||| || ||||| ||||||||||| | ||||||||| Sbjct 6117 TGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCA 6058 Query 2440 TTGGTAGTTCCCTTCGAACTGCAACAGCACGTGGAGATGAGGTTCCCCATTTTCATGCAG 2499 | ||| ||||||||||| || | |||||||||||| ||||||||| |||||||| || Sbjct 6057 TGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATG-AG 5999 Query 2500 C-TCTCTGCATATCTTGATGAATTTTTTATTGGTTGGGGTGTTGAG---ATGAAGAAGCT 2555 | |||||||| ||||||||| |||| || || |||||| || || |||| || | Sbjct 5998 CTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAA-TT 5940 Query 2556 GATCGAGAGCTTCTTCTTTGGTAAGAGAACATTGGGGATATGTAAG-AAAATAGTTTT 2612 || ||||||||| ||||| |||||||| || ||||||||||| || |||||| |||| Sbjct 5939 GA--GAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8807585160850