Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_013639.1 Length=2808 Score E Sequences producing significant alignments: (Bits) Value seq9745 581 6e-163 >seq9745 Length=7305 Score = 581 bits (644), Expect = 6e-163 Identities = 730/997 (73%), Gaps = 10/997 (1%) Strand=Plus/Minus Query 1629 AATGGCTCGTTGAGGGTGAAGAAGGTCGCATTCTTAATAGCCCAGGCTTTTAATGCCGCA 1688 ||||||| | ||||| |||| ||||| | | |||||||| || | || || Sbjct 6875 AATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCG 6816 Query 1689 TTCTTTTCCTCGTCCAGATATTCTATATATGATGATGTCGGTCCTGGATTGCAGAGGAAG 1748 ||||| || ||||| ||| | ||| |||| ||| | |||||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1749 ATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAG 1808 || ||||| || || ||||||| || || |||||| ||||| | | || ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1809 TCTCGCTGGGCCCCCATAAATTCCTTAAAGTGTTTTAGATAATGGGGATCGACGTCATCA 1868 || | | ||||||||| ||||||||||| ||||||| |||| | ||||| |||| |||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1869 ATGACGTTATACCAAGCGTTATTAGAATAAACCTTTGGACTTAAGTCTAAATGACCACAT 1928 |||||||| ||||| || | ||| || ||||| |||| || ||||||| ||| Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1929 AAGTAATTATGTGGCCCTAATGACCTAGCCCAAACTGTTTTGCCGGTACGACTATCGCCC 1988 |||||||| ||||| |||||||| |||||||| | |||||| || || | | || || Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1989 TCAATAACTATACTAATCGGTCTTAAAGGCCGCGCAGCGGCACTCATGACGTTTTCCGAA 2048 || | ||||||||| || |||| ||||| | ||| |||||||| |||||||| | Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 2049 ACCCACTCTTCAAGTTCTTCCGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAAACA 2108 ||||| |||| ||| ||||| || | ||||| | | |||| ||||||||||||| Sbjct 6455 ACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACA 6396 Query 2109 TAAGGAGCTGGAGGCTCCTGAAAAATCCTATCTAAATTTGATTTTAAATTATGATATTGA 2168 || || || || |||| || ||| |||| ||||| | ||||| ||||| | | Sbjct 6395 TATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGT 6336 Query 2169 AAAATAAATTCTTTAGGGAGCTTCTCCTTAATAATAGCCATAGCGGCTTCAGCGGAACCT 2228 ||| | | ||||| ||| | || ||| |||| || | | || ||| || || Sbjct 6335 AAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCA 6276 Query 2229 GCGTTTAATGCTTCTGCGGCTGCGTCGTTAGC--ATT-CTGGCAGCCTCCTCTA---GCA 2282 | |||| ||||||||| | || ||||| ||| || | |||| | || ||| Sbjct 6275 GAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCA 6216 Query 2283 CTTCTGCCGTCGATTTGGAATTCTCCCCATTCAAGTGTGTCCCCGTCCTTGTCGATGTAG 2342 ||| || || || |||||||||||||| |||| ||| || |||| ||| ||||| || Sbjct 6215 GATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATAC 6156 Query 2343 GACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTT 2402 ||||| |||| ||||||||||||| ||||||| ||||||||||||||||||| |||||| Sbjct 6155 GACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTG 6096 Query 2403 GTTGGGGATACCAGGTCGAAGAATCGTTGATTCTGGCAGTTGTATTTGCCTTCGAATTGC 2462 ||||| || || || |||||||||| | |||| ||| |||| || ||||||||||| Sbjct 6095 GTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGG 6036 Query 2463 AGAAGCACATGGAGATGAGGCTCGCCATTTTCGTGGAGTTCTCTGCAGATTTTGATGTAT 2522 | |||||| |||||| |||| || | ||||| || ||||||||| || ||||||||| Sbjct 6035 ATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTAT 5976 Query 2523 TTTTTGTTAGTTGGAGTATCGAGGTTTTG--TAATTGGGAAAGTGCCTCTTCTTTTTCGA 2580 || ||||| ||| |||| |||||||| ||||| || || || || |||||| | Sbjct 5975 TTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAA 5918 Query 2581 GAGAGCATTTGGGATAAGTGAGGAAATAATTTTTTGA 2617 ||||||| | |||||| || || ||| |||||| || Sbjct 5917 GAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGA 5881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8788569143950