Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_013640.2 Length=2823 Score E Sequences producing significant alignments: (Bits) Value seq9745 264 2e-67 >seq9745 Length=7305 Score = 264 bits (292), Expect = 2e-67 Identities = 516/767 (67%), Gaps = 13/767 (2%) Strand=Plus/Minus Query 1764 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1823 |||||||||||| |||||||| ||||| || |||||||||| || || ||||||||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1824 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1883 | | | || | ||||| || | | ||||||||||||||||||||| || |||| || Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATA 6655 Query 1884 TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTAAACTTTTGGGCT 1943 | || | |||| |||||||||||| ||||| ||| ||| |||| ||||||||| Sbjct 6654 ACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCT 6595 Query 1944 TAAATCTAAATGCCCACACAAGTAATTGTGAGGGCCCAAAGACCTGGCCCATACTGTTTT 2003 || ||| |||| || || ||||||||||| ||||| || || || ||||||| |||||| Sbjct 6594 TATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTT 6535 Query 2004 TCCTATTCT-GCTTGGGCCTTCAATAACAATGGATATGGGTCTATCCGGCCGCGCAGCGG 2062 || |||| || | ||||| | ||| || || |||| | |||| | ||| || Sbjct 6534 CCCAGTTCTAGCCT-CACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGG 6476 Query 2063 AATCCATGACATTTTCAGCGGCCCAGTCGCTGATAATGTCAGGAACGGCATTGAAAGNNN 2122 | || || ||||| | ||||||| | ||| || || ||| || || | Sbjct 6475 CACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTAC 6416 Query 2123 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAAAATCCTATCTAAATTAG 2182 || ||| |||| ||||||| Sbjct 6415 TGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAG 6356 Query 2183 AAACTAAATTATGATATTG-AAATAAAAATTTTTCAGGAAGTTTCTCCCTGATTATTTGC 2241 | ||| ||||| | | |||||| ||| ||| || |||| ||||| ||||| | Sbjct 6355 CATTTAATCTATGAAAACGTAAATAATAATCTTT-TGGGCGTTTTTCCCTAATTATCTCT 6297 Query 2242 AACGCAGTTTCTTTAGAACCTGCGTTTAGAGCCTCTGCGGCTGCGTCATTAGCAGTCTGC 2301 || || | | |||||| || | ||||| || |||||| | |||||||| | || Sbjct 6296 AAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGT 6237 Query 2302 TGACCTCCTC------TAGCAAATCTGCCGTCGATCTGGAATTCACCCCATGTGAGGGTA 2355 ||||| |||| | ||| |||| || || ||||||||||| ||||| | ||| Sbjct 6236 TGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTA 6177 Query 2356 TCCCCGTCCTTGTCAACGTAGGACTTGACATCGGACGAGGATTTA-CTCCCTGGCATG-T 2413 || |||| ||| || | || ||||| || | ||| ||||||| |||||| | ||| | Sbjct 6176 TCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCT-GTATGTT 6118 Query 2414 TGGGGGGAAAGGATTCGATCTGTTCGGTGAGACCAGATCGAAGAATCTGGAATTTGTGCA 2473 ||| ||||| | | || ||| | || ||||| ||||||||||||||| ||| ||||| Sbjct 6117 TGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCA 6058 Query 2474 GACGAATTTGCCTTCGAACTGCACCAACACCATGAGGTGAGGTTCCC 2520 | | || |||||||| || | | ||| ||| ||||||||| Sbjct 6057 TGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCC 6011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8836109186200