Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014066.1 Length=2612 Score E Sequences producing significant alignments: (Bits) Value seq9745 345 7e-92 >seq9745 Length=7305 Score = 345 bits (382), Expect = 7e-92 Identities = 327/416 (79%), Gaps = 10/416 (2%) Strand=Plus/Minus Query 2082 ATCGTTAGCTGATTGCTGGCCTCCTCTAG------CAGATCTGCCGTCGATCTGAAATTC 2135 ||| ||||| ||||| || || ||||| | ||||||| || || ||||| ||||| Sbjct 6252 ATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTC 6193 Query 2136 TCCCCATTCGATTGTATCTCCGTCCTTGTCGATATAGGATTTGACGTCGGAGCTGGATTT 2195 |||||| || ||||||||||||| ||| |||||||| || || |||| |||||||||||| Sbjct 6192 TCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTT 6133 Query 2196 AGTTCCCTGAATGTTCGGATGGAAATGTGCTGACCGACTTGGGGACACCAGGTCGAAGAA 2255 | |||||| ||||| ||||||||||||| ||||| |||| || || || |||||||| Sbjct 6132 ACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAA 6073 Query 2256 TCTGTTATTCGTGCATCTGTATTTCCCCTCGAACTGGATAAGGACGTGCAGATGAGGTTG 2315 |||||||||||||||| |||| ||||| ||||| |||||||| ||||| ||| |||||| Sbjct 6072 TCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTC 6013 Query 2316 CCCATCTTCGTGAAGTTCTCTGCAGATTTTGATGAATTTCTTGTTGACCGGAGTGTTTAG 2375 || | ||| ||| ||||||||| || |||||| |||||||||| || || || ||||| Sbjct 6012 CCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAG 5953 Query 2376 GTTTTG--TAATTGGGAAAGTGCCTCTTCTTTTGTAAGAGAACACTGTGGATATGTGAGG 2433 |||||| |||||| || || | || |||||||||||||| || || |||||||| || Sbjct 5952 GTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGA 5895 Query 2434 AAATAGTTTTTCTGATTTATCTGAAATCGTTTAGGCGGTGGCATATTTGTAAATAA 2489 ||| ||||| | || |||| || | || |||||||||||||| ||| Sbjct 5894 AAAATATTTTTAGAAGAAATGCGAAAACGAGAACTCGTTGGCATATTTGTAAGTAA 5839 Score = 122 bits (134), Expect = 1e-24 Identities = 279/420 (66%), Gaps = 9/420 (2%) Strand=Plus/Minus Query 1470 GAAGAGCGCATTCTTGATGGTCCAGTTCCTGAGTGATGCGTTTTCCTCTTTGTCGAGGAA 1529 ||||| ||||| ||| | |||| | | | | |||||| | |||| ||| || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1530 ATCTTTATAGCTTGCACCCTCACCTGGATTGCAAAGCACGATTGATGGGATACCTCCTTT 1589 |||||||| |||| |||||||||||||| | ||||| || || || ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1590 AATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAATCCTTTTGGGCCCCGATCAA 1649 || || || ||||| |||||| | | ||| |||||||||| ||| |||||| || || Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1650 TTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCGTCAATGACGTTATACTC 1709 ||| || | | | |||| ||| |||| | |||| ||||||||||| ||| Sbjct 6675 TTCCTTAAAAT------GTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCA 6622 Query 1710 CACTTCGTTTGAATAGACTCGTGGGTTGAAGTCCAGGTGTCCACTGAGGTAGTTATGTGG 1769 | || || || | |||| | | || || || | | ||| || ||||| Sbjct 6621 GGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGG 6562 Query 1770 GCCTAGCGCACGTGCCCACATTGTCTTTCCGGTCCTCGAATCACCTTCAACGATGATACT 1829 ||||| | | ||||| ||||| || || || || | |||||||| || | ||||| Sbjct 6561 GCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACT 6502 Query 1830 AACTGGTCTCTCAGGCCGCGCAGCGGGATCCCTTCCAAAATATTCATCGACCCACTCTTG 1889 | |||| | ||||| | ||| || | || ||| | ||| || ||||| ||||| Sbjct 6501 CATAGGTCGGTGAGGCCTCCCAGAGG---CACTCACAACGTTTTCTTCAACCCAGTCTTG 6445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8172807206280