Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014130.1 Length=2611 Score E Sequences producing significant alignments: (Bits) Value seq9745 334 1e-88 >seq9745 Length=7305 Score = 334 bits (370), Expect = 1e-88 Identities = 710/1047 (68%), Gaps = 42/1047 (4%) Strand=Plus/Minus Query 1471 GAAGAGCGCATTCTTCAGGGTCCAATTCTTTAGACCTGTGTTTTCCTCTTTGTCTAGGAA 1530 ||||| ||||| | || | ||| ||| | | ||| ||| | |||| ||| || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1531 GTCTTTATAGCTGGCACCCTCACCCGGATTGCAAAGCACGATTGATGGAATCCCGCCTTT 1590 |||||||| || | || ||||||||||| | ||||| || ||||||||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1591 AATTTGAACTGGTTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAG 1650 || || || || || |||||| | | ||| ||||||| || | | |||||||| | Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1651 TTCTTTCCAGTGCTTCAACTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTC 1710 ||| || | || || || ||| |||| | |||| |||||||||||| ||| Sbjct 6675 TTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTACCA 6622 Query 1711 CACTTCATT--TGAATATACCCGGGGATTGAAGTCCAGATGTCCACTGAGATAATTATGT 1768 | ||||| || | | ||| | | || ||| || | | ||||| ||| Sbjct 6621 GGCATCATTGTTGTACGTTTTTGGGCTTATA--TCATAATGACCGCATAAGTAATTGTGT 6564 Query 1769 GGGCCTAACGCACGAGCCCACATTGTCTTACCTGTCCTTGAGTCACCTTCCACTATGATA 1828 |||||||| | | |||||| ||||| || || || || | |||||||| || | ||| Sbjct 6563 GGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATA 6504 Query 1829 CTTACTGGTCTATCTGGCCGCGCAGCGGAACCTCTCCCAAAATAACTGTCCGCCCAGTCT 1888 || | |||| | |||| | ||| || || || ||| | || |||||||| Sbjct 6503 CTCATAGGTCGGTGAGGCCTCCCAGAGGCAC---TCACAACGTTTTCTTCAACCCAGTCT 6447 Query 1889 TGCATTTCTTCAGGAACGGCAGTGAAAGAGGAGAGGGGA--AACGGAGGAGACCAT---G 1943 || | || || ||| || ||| | | || | || |||| | || | Sbjct 6446 TGAAGAATCTCCGGTACGTT-GTTAAAT-GTACTGGATACAAAAGGAGAAACATATATTG 6389 Query 1944 GATCCGGAGACTTACTGAAAATCCTATCGAGGTTACTGGATAGGTTGTGATATTGGAAAA 2003 | |||| || ||| ||| |||| | ||| || | ||| | | ||| Sbjct 6388 CAGGTGGAGCCTG---GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAAT 6332 Query 2004 GATATTTTTCCGGCAACTTTTCTCTGATGATTTTCAGTGCCGCCTCCTTTGTTCCAGAAT 2063 ||| | || || ||||| || || || | | || || || | ||||||| Sbjct 6331 AATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAAT 6272 Query 2064 TCAATGCCTCGGCGGCTGCATCATTAGATGTTTGCTGACCTCCGCGAGCACTT------C 2117 | | || || ||| ||||||||| | ||| ||||| || | | | || | Sbjct 6271 TTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATC 6212 Query 2118 TTCCGTCGATCTGGAACACTCCCCATTCAATGGTGTCCCCGTCTTTCTCGACGTAGGACT 2177 |||| || |||||||| ||||||| ||||| || || |||| ||||||| || |||| Sbjct 6211 TTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACT 6152 Query 2178 TGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTACTGAACTGGTTG 2237 | |||| ||||||||||||| ||||||||||||| |||||||||||| ||| ||||||| Sbjct 6151 TCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTG 6092 Query 2238 GGGACACCAGATCGAAGAATCTGTTATTCGTGCAGTTGTACTTCCCCTCGAACTGGATGA 2297 | || || |||||||||||||||||||||||||| |||||||||| ||||| ||||| | Sbjct 6091 GAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAA 6032 Query 2298 GCACATGGATATGAGGCTCCCCATTTTCGTGAAGCTCTCTGCAAATTTTGATGAACTTCT 2357 |||| |||| | |||| |||| ||||| ||| ||||||||||| |||||| | |||| Sbjct 6031 GCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCT 5972 Query 2358 TGTTCACCGGAGTATTTAATGTTTG--TAATTGGGAAAGTGCTTCCTCTTTGGTGATGGA 2415 |||| || || ||||||| |||| |||||| || || |||||||||| || | || Sbjct 5971 TGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGAGA 5914 Query 2416 GCACTGCGGATATGTGAGGAAATAGTTTTTGGCTTTAACTGAGAA----AGAACCCTTTC 2471 ||| || |||||||| || ||| ||||| | || || ||| ||||| | | Sbjct 5913 GCAGTGGGGATATGTTAGAAAAATATTTTTAG-AAGAAATGCGAAAACGAGAACTCGT-- 5857 Query 2472 GTGGCATTTTTGTAAATATA-GGATGT 2497 |||||| ||||||| || | |||||| Sbjct 5856 -TGGCATATTTGTAAGTAAATGGATGT 5831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8169636994020