Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014140.1 Length=2768 Score E Sequences producing significant alignments: (Bits) Value seq9745 295 1e-76 >seq9745 Length=7305 Score = 295 bits (326), Expect = 1e-76 Identities = 662/981 (67%), Gaps = 24/981 (2%) Strand=Plus/Minus Query 1614 GAAGATCGCATTTTTTAAAGCCCACTCCTTAAGCGCTGCATTCGACTCCTCATCCATATA 1673 ||||| |||||| | | |||||| ||||| ||||| ||| || || || | | | Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1674 TTCTTTATAGGAAGATCTGGGGCCAGGATTGCAGAGGAAAATTGTTGGTATTCCACCTTT 1733 |||||||| || |||| || |||||||| ||||| ||||| || || || ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1734 AATTTGAGTGGGCTTGCCGTA-CTTCACGTTGCTTTGCCAGTCTCTTTGGGACCCCATGA 1792 || || | |||||| ||||| |||| || ||||| || |||| || |||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTA-TTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1793 ATTCTTTCATATGCTTTAGATAGTGGGGATCTACGTCATCGATGACGTTGTACCAGGCAT 1852 |||| || | ||| |||| ||| | ||||| |||| ||| ||||||||||||||||||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1853 CGTTTGAATAGACCTTGGCGCTGAGATCTAAATGACCACATAGGTAATTGTGCCTACCAA 1912 | || || || | ||| | ||| ||||||| |||| ||||||||| || | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1913 GGCTTCTGGCCCACATCGTCTTCCCCGTCCTGGATTCACCTTCCAGGACGATGCTTATGG 1972 ||| ||||| || || ||||| || || | |||||||| | || || || || | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1973 GTCTCATCGGCCGCGCAGCGGAAGCTTTC-ACATTATCTGATGCCCA---TTGAGACAGA 2028 ||| |||| | ||| || | || | || || ||| |||| |||| ||| Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCA-CTCACAACGTTTTCTTCAACCCAGTCTTGA---AGA 6441 Query 2029 ACTTCCGGCACATTGTTAAATTGTTC-AACTTTAAAAGGCGATTTGTAAATCGTCGTTGG 2087 | ||||| || |||||||| ||| | | |||||| || || || | | ||| Sbjct 6440 ATCTCCGGTACGTTGTTAAA-TGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGG 6382 Query 2088 AGGCGTAAAAATCTTATTGAGGTTGCTAATAACATTATGATACTGAAAAACATAATCTCG 2147 || | || ||| ||| | || | | | ||||| | | ||| ||||||| Sbjct 6381 AGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTT 6322 Query 2148 TGGAAGCTGCTCTTTGATGATCTGTAAAGCAGCTTCAGCGGAACCAGCATTTAATGCCGA 2207 ||| | | || | || |||| ||| || ||| || |||| ||||| || Sbjct 6321 TGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTC 6262 Query 2208 CGCACATGCGTCGTTAGC--ATTTTTGCAACCTCCTC------TGGCACTTCGACCATCA 2259 || | | || ||||| ||| ||| ||| |||| | ||| || ||||| Sbjct 6261 TGCGTAAACATCATTAGCCGATTGTTG--ACCCCCTCTTGTAGTTGCAGATCTTCCATCC 6204 Query 2260 ATCTGGAAAGACCCCCATTGTATGGTGTCTCCGTCTTTGTCGATGTATGTTTTGACGTCC 2319 |||||||| ||||| | || || ||||||| || ||||| || | || |||| Sbjct 6203 ATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAG 6144 Query 2320 GAACTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTTCTTGGGGAAGTG 2379 || || |||||| ||||||| ||||| |||||||||||||||||||| |||| || Sbjct 6143 GAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACA 6084 Query 2380 AGGTCGAAGTGTCTTTCGTTCGT-AATTTGACACTTTCCTTCAAACTGGATAAGCACATG 2438 || |||||| ||| | ||||| || || |||| ||||| || ||||||||||| || Sbjct 6083 AGATCGAAGAATCTGTTATTCGTGCATGTG-TACTTCCCTTCGAATTGGATAAGCACGTG 6025 Query 2439 GAGATGTGGTTCCCCATTCTCGTGTAGTTCACGAGCTATCTTGATGAACTTCTTGTTAGA 2498 |||| | ||||||| || || || ||| | ||||||||| | |||||||| Sbjct 6024 GAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTAC 5965 Query 2499 TGGACATTGAATGCTCTGCAATTGTGAAAGTGCTTCTTCTTTTGTGAGAGAACATCTGGG 2558 ||| | | | | || | ||| || ||||| |||||||| ||||| || ||| Sbjct 5964 TGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGG 5905 Query 2559 ATATGTGAGGAAAATGTTCTT 2579 |||||| || ||||| || || Sbjct 5904 ATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8667360318840