Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014141.1 Length=2708 Score E Sequences producing significant alignments: (Bits) Value seq9745 324 2e-85 >seq9745 Length=7305 Score = 324 bits (358), Expect = 2e-85 Identities = 625/907 (69%), Gaps = 30/907 (3%) Strand=Plus/Minus Query 1646 TGTGTCCCGGGTTGCATAAAAAGATGGTGGGAATTCCCCCTTTAATTTGAATCGGTTTAC 1705 || |||| || ||||| | ||||| ||||| || || ||||||| || || || || | Sbjct 6778 TGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTC 6719 Query 1706 CGTATTTCGTGTTGCTCTGCCAATCATGCTGGGCCCCCATGAATTCCTTGAAGTGCTTTA 1765 ||||| | | || |||||||||| | |||||||||||||||||| || || |||| Sbjct 6718 CGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTA 6659 Query 1766 GGTAGTGCGGATCTACGTCATCGATGACGTTGTACCATGCATTATTGCTGTACACCTTTG 1825 || ||||||| |||| ||| |||||||||||||| |||| |||| ||||| |||| Sbjct 6658 AATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTG 6599 Query 1826 GACTCAGGTCTAGATGACCACATAGGTAATTGTGTACCCCCAAAGACCGCGCCCACATCG 1885 | || | || |||||| |||| |||||||||| || || || | ||||| || | Sbjct 6598 GGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTG 6539 Query 1886 TCTTCCCCGTTCTGGAATCACCTTCAACGACGATACTCATGGGTCTGTTAGGCCGCGCAG 1945 | ||||| ||||| | |||||||| || || |||||||| |||| || ||||| | ||| Sbjct 6538 TTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAG 6479 Query 1946 CGGGATCTTTC-ACATTAACAGACACCCAATCAAGCATAACGTCCGGGACGTTGTTAAAT 2004 || | || | || || | ||||| || | | || ||||| |||||||||||| Sbjct 6478 AGGCA-CTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAAT 6420 Query 2005 GAACGGGGATCATAAGGACAAGCCCA---TGGTGTTGGCTCCTTCATGAAAATCCTTTCT 2061 | || || || ||||| || | | || | ||| ||| ||| ||| | || Sbjct 6419 GTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT---GGAATATCATATCC 6363 Query 2062 AAATTA-CCTTTAAGGTGGTGGAACTGTAATACATAATCCTTTGGACATGGTTCCTTTAA 2120 |||||| | ||||| | || || |||| |||||| ||||| | | |||| | | Sbjct 6362 AAATTAGCATTTAATCT-ATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAAT 6304 Query 2121 TAACTGGAGAGC--CTTAGTCGGACTGCCCGTGTTAATTGCTGCGGCGTAAGCGTCGTTC 2178 || || | || || | ||| || | || | ||| | |||||| | || || Sbjct 6303 TATCTCTAAGGCTGCTGTTTTAGAC--CCAGAATTTAGGGCTTCTGCGTAAACATCATTA 6246 Query 2179 GCAGATTGCTTACCTCCACGACT------CGATCTTCCATCGATCTGAAACTCTCCCCAT 2232 || ||||| | ||| || | | ||||||||||| ||||| || |||||||| Sbjct 6245 GCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAA 6186 Query 2233 GACACGGTGTCGCCGTCTTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCT 2292 | || || |||| || ||||| || ||||| |||| ||||||||||||| |||| Sbjct 6185 TCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCC 6126 Query 2293 TGTACGTTTGGGTGGAACACATGAGCAGAC---GCTCTCGAGACAAGGTCGAACAGTCGA 2349 |||| |||||| ||||| ||| | ||| | | |||||||| ||||| | || Sbjct 6125 TGTATGTTTGGATGGAA---ATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTG 6069 Query 2350 GGATTTTTGATGGAGAATTTACCTTCGAATTGCAGCAGCACATGGAGATGTGGCTGCCCA 2409 ||| || | | | || ||||||||||| | ||||| |||||| | || | || Sbjct 6068 TTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTG 6009 Query 2410 TCTTCGTGTAGC-TCTCTAGCTACCTTGATGAACTTCTTGTTCACAGGTGTTGGTATACC 2468 | ||| || ||| ||||| | ||||||| | |||||||| || || || || Sbjct 6008 TTTTCATG-AGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTA-GGT 5951 Query 2469 CTTGAGTAATT-CCAGAGCTTCGTCTTTTGATAATGAGCATCTGGGATATGTGAGGAAGA 2527 |||| ||||| |||||||| ||||||| | ||||| ||||||||| || || | Sbjct 5950 TTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAA 5891 Query 2528 TATTCTT 2534 |||| || Sbjct 5890 TATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8477147583240