Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014324.1 Length=2981 Score E Sequences producing significant alignments: (Bits) Value seq9745 192 1e-45 >seq9745 Length=7305 Score = 192 bits (212), Expect = 1e-45 Identities = 328/466 (70%), Gaps = 20/466 (4%) Strand=Plus/Minus Query 2379 TAATCTTTAGGGAGTTTCTCCCTAATGACAGCCAAAGCGGCTTCAGCGGTACCTGAGTTT 2438 |||||||| ||| |||| |||||||| | | || || ||| | || || ||| Sbjct 6329 TAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTT 6270 Query 2439 AACGCCTCTGCACATGCATCATTAGCCGTCTGTTGACCTCCTCGTG------CAGATCGT 2492 | || ||||| | |||||||||||| |||||||| |||| || |||||| | Sbjct 6269 AGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTT 6210 Query 2493 GCATCGATCTGAAATTCACCCCAGTCGATGTAATCTCCGTCCTTCTCGATATAGGACTTG 2552 |||| ||||| ||||| ||||| || || |||||||| |||||||||||| ||||| Sbjct 6209 CCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTC 6150 Query 2553 ACGTCGGAGCTCGATTTAGCTCCCTGAATATTTGGGTGGCAGATG---CGACCGGAACCT 2609 |||| |||||| |||||| ||||||| || ||||| ||| | ||| |||| | | Sbjct 6149 ACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGG-AAATGTGTTGACCTG--GTT 6093 Query 2610 CCATCTCGTAAATCGAAATGACGGGGGTTATAGAGC-TG-GATTTTTCCTTCGAATTGGA 2667 | | |||||| || | | | | || || | || ||||||||||||| Sbjct 6092 GGAGAGACAAGATCGAA--GAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGA 6035 Query 2668 TAAGCACATGGAGATGAGGTTCCCCATTATCGTGCCTTTCTCTACAAATTCGTATGAATT 2727 ||||||| |||||| ||||||||| || || || |||||| ||||| ||| ||| Sbjct 6034 TAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATT 5975 Query 2728 TCTTGGTTGAAGGACACTGTATAGTTTG--TAGTTGCAGAAGAGCGTCTTCTTTAGTTAG 2785 ||||| || || | || |||| || ||| || ||||| || ||||| || || Sbjct 5974 TCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTG-AG-AGAGCTTCCTCTTTTGTAAG 5917 Query 2786 ATGGCAGTGAGGGTATGTTAGGAAAATGTTTTTAGCATGAATGCGA 2831 | |||||| || |||||||| ||||| ||||||| | ||||||| Sbjct 5916 AGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGA 5871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9336864297900