Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014446.1 Length=2608 Score E Sequences producing significant alignments: (Bits) Value seq9745 325 6e-86 >seq9745 Length=7305 Score = 325 bits (360), Expect = 6e-86 Identities = 650/950 (68%), Gaps = 35/950 (4%) Strand=Plus/Minus Query 1540 CCAGGATTGCAAAGCACGATTGCTGGGATCCCGCCTTTAATTTGAACTGGCTTGCCGTAC 1599 || ||||||||||| | ||||| || ||||||||||||| || || ||||| ||||| Sbjct 6773 CCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTAT 6714 Query 1600 TTGCAATTTGATTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAACTTT 1659 | | ||| | ||||| || | | |||||||| | ||| || | || ||||| Sbjct 6713 CTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA---- 6658 Query 1660 AGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACGTCATT--TGAAAATACTC 1717 ||| |||| | |||| |||||||||||| ||| | ||||| || | | | Sbjct 6657 --ATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTT 6600 Query 1718 GAGGGTTGAAGTCCAGATGTCCAC-TAAGATAATTATGTGGGCCTAACGAACGAGCCCAC 1776 | || | | || ||| || | |||| ||||| ||||||||||| || | |||||| Sbjct 6599 G--GGCTTATATCATAATGACCGCATAAG-TAATTGTGTGGGCCTAATGATCTAGCCCAT 6543 Query 1777 ATCGTCTTCCCTGTCCTCGAGTCACCTTCTACTATGATACTCATAGGTCTCTCCGGCCGC 1836 || || ||||| || || | ||||||||||| | ||||||||||||| | |||| | Sbjct 6542 ATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTC 6483 Query 1837 GCAGCGGCACCTCTTCCAAAATTCTCATCGGCCCATTCTTGCATCTCGTCGGGAACGGCT 1896 ||| ||||| | ||| || || || |||| ||||| | || || ||| | Sbjct 6482 CCAGAGGCAC---TCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGT-T 6427 Query 1897 GTGAAA-GAAGAGAGGGGAAACGGAGGAGCCCATGGCTCAGG---AGCCTTACTGAAAAT 1952 || ||| | | | ||| |||| | | || |||| ||||| ||| || Sbjct 6426 GTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTG---GAATAT 6370 Query 1953 CCGATGAGCATTGGCAACCAGATTGTGATGCTGAAGAAAGAAATGTTGAGGCTGTTCCTC 2012 | || ||| ||| | | ||| | | | | ||| || || ||| || Sbjct 6369 CATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTC 6310 Query 2013 CTTGATTATTTGCAGAGCCTCTTCTGCAGAAGAGGCATTCAACGCCTTGGCATATGTATC 2072 | | ||||| | | || || | ||| | ||| | || | || || ||| Sbjct 6309 CCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATC 6250 Query 2073 GTTAACCGATTGGCAGCCTCCTCTAGCACTT------CTCCCGTCGATCTGGAATTCACC 2126 ||| ||||||| || ||||| | | || || || || ||||||||||| || Sbjct 6249 ATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCC 6190 Query 2127 CCATTCCAGTGTGTCTCCGTCCTTGTTGATGTAGGACTTGACATCGGAGCTGGATTTAGC 2186 ||| || | ||| ||||||| ||| | ||| || ||||| || | ||||||||||||| | Sbjct 6189 CCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACC 6130 Query 2187 TCCCTGTATGTTTGGATGGAATGGGACTGACATGGATGGTGAGACCAGGTCGAAGAATCT 2246 ||||||||||||||||||||| | |||| ||| ||| ||||| || ||||||||||| Sbjct 6129 TCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCT 6070 Query 2247 GTAATTCGTGCATGCATATTTCCCCTCGAATTGTATAAGCACGTGGAGATGAGGCTTCCC 2306 || ||||||||||| || ||||| |||||||| ||||||||||||||| |||| | || Sbjct 6069 GTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCT 6010 Query 2307 ATTCTGATGGAACTCTCTGCAGATCTTGATGAACTTCTTGTTCACAGGAGTGGACAGGTT 2366 || | ||| |||||||| ||||||||| | |||||||| || || || ||||| Sbjct 6009 GTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTT 5950 Query 2367 TTG--TAATTGAGAAAGTGCTTCTTCTTTGCTCAGGGAGCAGTCGGGATATGTGATGAAA 2424 ||| |||||||| || ||||| ||||| | || ||||||| ||||||||| | ||| Sbjct 5949 TTGAATAATTGAG--AGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAA 5892 Query 2425 TAGTTTTTGGCATTTATTTTAAAACGTTTAACT-GATGGCATTTTTGTAA 2473 ||||| | | || |||||| |||| | |||||| ||||||| Sbjct 5891 ATATTTTTAGAAGAAATGCGAAAACG-AGAACTCGTTGGCATATTTGTAA 5843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8160126357240