Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014510.2 Length=2591 Score E Sequences producing significant alignments: (Bits) Value seq9745 367 2e-98 >seq9745 Length=7305 Score = 367 bits (406), Expect = 2e-98 Identities = 683/997 (69%), Gaps = 27/997 (3%) Strand=Plus/Minus Query 1442 TGAGGAAGATGAATTTTGCATTGTGGAGTGTCCACGCTCTTAGAGCTGCATTTTCCTCTT 1501 ||||||| ||| |||||| ||| | ||| | | | |||||| || | |||| Sbjct 6865 TGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTT 6806 Query 1502 TCTCAAGGAAGTCTTTATAGCTCTGTCCCTCTCCTGGATTGCAGAGCACGATAGAGGGTA 1561 ||||| || |||||||| || |||||||||||| || | ||| | ||| | Sbjct 6805 CGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCA 6746 Query 1562 TGCCACCTTTAATTTGAATTGGCTTTCCGTATTTACAGTTTGATTGCCAATCTTTCTGGG 1621 | || ||||||| || || |||||||||||| | | || | |||||||| | | || Sbjct 6745 TCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGG 6686 Query 1622 CCCCTATCAGCTCTTTCCAATGTTTCATCTTTAAATATTGCGGACTGACGTCATCAATGA 1681 |||| || | || || ||||||| |||||| ||||| |||| |||||||| Sbjct 6685 CCCCCATGAATTCCTTAAAATGTTT------TAAATAACGCGGATCAACGTTATCAATGA 6632 Query 1682 CGTTATAGTCCGCTCCATTTGAATAAACTTTGGAATTAAAATCCAGGTGTCCACTCAGAT 1741 |||| || || |||| || ||| | | | ||| || || | | | Sbjct 6631 CGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGT 6572 Query 1742 AATTATGTGGGCCTAGTGCACGAGCCCACATAGTCTTACCTGTCCTTGAACATCCCTCTA 1801 |||| |||||||||| || | |||||| || || || || || || | || |||| Sbjct 6571 AATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTA 6512 Query 1802 TTATTATACTGATAGGTCTTTCTGGCCGCGCAGCGGCACCCCTACCAAAATAATCATCAG 1861 | |||||| ||||||| | |||| | ||| ||||| | ||| | || ||| Sbjct 6511 CAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCA---CAACGTTTTCTTCAA 6455 Query 1862 CCCATTCTTGCATCTCCTCCGGGACGTTAGTGAAGGAGGAGAGTGGAAACGGAGGAGACC 1921 |||| ||||| | |||||| ||||| | || | | | ||| |||| | || Sbjct 6454 CCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAA-ACA 6396 Query 1922 ---ATGGCTCC-GGAGCCTTCGAAAAAATTTTATCTAAATTACAATTTAAATTATGAAAT 1977 || || ||||||| || || |||| |||||| |||||| ||||||| Sbjct 6395 TATATTGCAGGTGGAGCCTGG---AATATCATATCCAAATTAGCATTTAATCTATGAAAA 6339 Query 1978 TGAAATAAATATTTTTCAGGGAGTTTCTCCCTTATTATTTGGAGGGCTGCCTCTTTGCTA 2037 | || |||| | || ||| |||| ||||| ||||| | | |||||| ||| Sbjct 6338 CGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGAC 6279 Query 2038 CCGCTATTTAAGGCTTCTGCGGCAGCGTCGTTAGCAGTTTGGCTGCCTCCTCTAGCACTT 2097 || ||||| |||||||||| | | || ||||| | ||| || ||||| | | || Sbjct 6278 CCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTT 6219 Query 2098 ------CTGCCGTCGACTTGGAATTCTCCCCATTCAAGTGTATCTCCGTCCTTGTCGACG 2151 || || || | |||||||||||||| |||| ||||||||||| ||| |||| Sbjct 6218 GCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATA 6159 Query 2152 TAGGCGTTGACGTCGGTGCTGGATTTAGCTCCCTGAACGTTCGGATGGAAATGTGTTGAC 2211 || | || |||| || |||||||||| ||||||| | ||| |||||||||||||||||| Sbjct 6158 TACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGAC 6099 Query 2212 CTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCTTACATTGGAATTTGCCTTGGAAC 2271 |||||||| || || || |||||||||||||||||| | ||| | | || |||| ||| Sbjct 6098 CTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAAT 6039 Query 2272 TGGAGTAGCACGTGGAGATGATGTTGCCCATCTTCGTGAAGTTCCCTTGCAATTTTGATA 2331 |||| |||||||||||| || ||| || | ||| ||| ||| || ||| ||||| Sbjct 6038 TGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATG 5979 Query 2332 TATTTCTTATTTGTGGGTGTCTCTAGATTTTGCA--ATTGGGAAAGTGCTTCTTCTTTGG 2389 |||||||| ||| || || | ||| ||||| | |||| || || |||| ||||| | Sbjct 5978 TATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTG 5921 Query 2390 TTAAATTGCAGTGGGGATATGTAAGAAAATAATTTTT 2426 | | | ||||||||||||||| |||||| |||||| Sbjct 5920 TAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8106232748820