Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014542.1 Length=2763 Score E Sequences producing significant alignments: (Bits) Value seq9745 423 3e-115 >seq9745 Length=7305 Score = 423 bits (468), Expect = 3e-115 Identities = 558/774 (72%), Gaps = 6/774 (1%) Strand=Plus/Minus Query 1599 GAACAGTGGCTCGTAGAGGGTGACGAAGGTTGCATTCTTGAGAGCCCAATTTTTTAATGA 1658 ||| | ||||| | |||| ||||| |||||| |||||||||| || | | Sbjct 6879 GAATAATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGC 6820 Query 1659 TATGtttttttCTTCGTCTAGATATTCCTTATATGATGAGGTAGGTCCTGGATTGCAGAG 1718 | ||| || |||||||| ||| | || ||||| |||| | |||||||||||||| || Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1719 GAAGATAGTGGGAATACCCCCTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTG 1778 |||||| ||||| || || ||||||| || || |||||| ||||| || | || || Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1779 CCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATAATGCGGGTCTACGTC 1838 ||| || || | |||||||||||||||||| || || ||||||||| |||| || |||| Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTT 6640 Query 1839 ATCAATGACGTTGTACCACGCATCAGTACTGTACACCTTTGGACTTAGGTCTAAATGGCC 1898 |||||||||||||||||| |||||| | ||||| ||||| |||| || |||| || Sbjct 6639 ATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACC 6580 Query 1899 ACACAAATAATTATGTGGGCCTAGAGACCTGGCCCACATTGTTTTGCCGGTCCTGCTATC 1958 || || ||||| |||||||||| || || ||||| |||||||| || || || || Sbjct 6579 GCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTC 6520 Query 1959 ACCCTCGATGATAATACTATTAGGTCTCCATGGCCGCGCAGCGGAAGACATGACGTTCTC 2018 ||| || | | ||||| |||||| |||| | ||| || | || ||||| || Sbjct 6519 ACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTC 6460 Query 2019 GGACACCCAGACTTCAAGTTCCTCAGGAACTTGGTTAAAAGAAGAAGATAAAAAAGGAGA 2078 |||||| ||| ||| ||| || || | |||||| | | |||| ||||||||| Sbjct 6459 TTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGA 6400 Query 2079 AATATAAGGAGCCGGTGGCTCCTGAAAAATCCTATCTAAATTACATTTTAAATTATGATA 2138 || ||| || ||||| |||| || ||| |||| |||||| ||||| ||||| | Sbjct 6399 AACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAA 6340 Query 2139 TTGAAAAATAAAATCTTTTGGGAGTTTTTCCCTTATTATTGATAAAGCCTCTTCCGCCGA 2198 | ||| | ||||||||||| |||||||||| ||||| ||| || || || Sbjct 6339 ACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGA 6280 Query 2199 ACATGCATTTAGGGCCTCTGCTGCTGCATCATTAGCTGTCTGTTGACCTCCTC------G 2252 | | ||||||||| ||||| |||||||||| | |||||||| |||| Sbjct 6279 CCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGT 6220 Query 2253 AGCAGATCTTCCATCGATCTGAAACTGACCCCAGTCGATGTAATCACCGTTCTTCTCGAT 2312 |||||||||||||| ||||| || | ||||| || || ||| |||| ||||||||| Sbjct 6219 TGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGAT 6160 Query 2313 GTAGGACTTGACATCGGAGCTGGACTTTGCTCCCTGGAAGTTTGGGTGGAATTG 2366 || ||||| || | ||||||||| || ||||||| | |||||| ||||| || Sbjct 6159 ATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATG 6106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8651509257540