Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014596.1 Length=2707 Score E Sequences producing significant alignments: (Bits) Value seq9745 540 2e-150 >seq9745 Length=7305 Score = 540 bits (598), Expect = 2e-150 Identities = 727/996 (73%), Gaps = 36/996 (4%) Strand=Plus/Minus Query 1553 TGGCTCCGTGAGGGTGATGAATTCTGCATTCTTGAGTGCCCAGTCTTTGAGTGCTGAATT 1612 ||||| |||||| ||| ||||||| |||| |||||| || | |||| || Sbjct 6873 TGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTT 6814 Query 1613 CTTTTCCTCGTC------CTCTCTTATAGAT-GATTTCGGGCCTGGATT-CAGAG--AGA 1662 ||| || ||||| |||| ||||| | || || || |||||||| || || ||| Sbjct 6813 CTTATCTTCGTCAAGAAACTCT-TTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGA 6755 Query 1663 TAGTGGGATTCCA--CTTTA--TTTGCAGGGCTTCCCGTACTTTGTGTTCTT-TGCCAGT 1717 | ||||| ||| ||||| || ||||||| ||||| || | || | ||||| | Sbjct 6754 TTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAAT 6695 Query 1718 CCCTTTGGGCCCCCATGAAT-CTTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAA 1776 | |||| ||||||||||||| | ||||| || |||| ||| | ||||| |||| ||||| Sbjct 6694 CACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAA 6635 Query 1777 TGACGTTGTACCAGGCATCATTACTGTACACCTTTGGACTCAGGTCAAGGTGACCACATA 1836 |||||||||||||||||||||| ||||| ||||| || | ||| ||||| |||| Sbjct 6634 TGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATA 6575 Query 1837 AATAGTTATGTGGACCCAGAGACCTGGCCCACATGGTCTTCCCTGTTCTACTCTCACCCT 1896 | || || ||||| || | || || ||||| || || ||||| |||||| |||||| | Sbjct 6574 AGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTT 6515 Query 1897 CTATGACTATACTGACGGGTCTCCAAGGCCGCGCAGCGGCATCCCTTACATTTTCTGAAA 1956 ||| |||||||| | |||| ||||| | ||| |||| | || |||||| || Sbjct 6514 CTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAA 6455 Query 1957 CCCAGCATTCAAGTTCTTCTGGAACTTGATCGAATGAAGAAGATAAAAAAGGAGAAACAA 2016 ||||| || ||| || || || | | |||| | |||| ||||||||||||| Sbjct 6454 CCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACAT 6395 Query 2017 AAACCTCTAAAGGAGGTGCA---AAAATCCTATCTAAATTAGCATTTAAATTATGAAATT 2073 | | | ||| || || || ||| |||| |||||||||||||| ||||||| Sbjct 6394 ATATTGC---AGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAAC 6338 Query 2074 GTAATACATAATCCTTAGGTGCTAATTCCTTAATTA-CGCTAAGAGCCTCCGACTTACTT 2132 |||| |||||| || || | |||| |||||| | ||||| || | | ||| Sbjct 6337 GTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGAC 6279 Query 2133 CCTGTGTTAATCGCCTTGGCGTAAGCATCATTGGCTGATTGTTGTCCCCCTCTTG----- 2187 || | || | || | |||||| ||||||| || |||||||| |||||||||| Sbjct 6278 CCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTT 6219 Query 2188 -CAGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTATCCATA 2246 ||||||||||||| ||||| || |||||||| || | || ||||||| ||| || ||| Sbjct 6218 GCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATA 6159 Query 2247 TAGGACTTGACATCGGAACTCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGAC 2306 || ||||| || | ||| || |||||| ||||||| ||||| ||||||||||||| |||| Sbjct 6158 TACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGAC 6099 Query 2307 CTGGTTGGGGAGACCAGGTCGAAGAATCTGTTATTCTGGCATTTGTATTTCCCTTCGAAC 2366 |||||||| ||||| || |||||||||||||||||| |||| |||| ||||||||||| Sbjct 6098 CTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAAT 6039 Query 2367 TGGATAAGCACGTGGAGATGAGGAGACCCATTCTTCGTGAAGCTCTCTGCAGATCTTGAT 2426 |||||||||||||||||| |||| ||| | ||| ||| |||||||| |||||||| Sbjct 6038 TGGATAAGCACGTGGAGACGAGG-TTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGAT 5980 Query 2427 GAATTTTTTATTTGTAGGTGTGGATAGGTTTCG--TAATTGGGAAAGTGCTTCCTCTTTG 2484 | |||| || ||| || || ||||||| | ||||| || || ||||||||||| Sbjct 5979 GTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTT 5922 Query 2485 GTGAGTGAGCACTGTGGATAAGTGAGGAAATAATTT 2520 || || ||||| || ||||| || || ||| |||| Sbjct 5921 GTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTT 5886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8473977370980