Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014645.1 Length=2792 Score E Sequences producing significant alignments: (Bits) Value seq9745 583 2e-163 >seq9745 Length=7305 Score = 583 bits (646), Expect = 2e-163 Identities = 732/995 (74%), Gaps = 16/995 (2%) Strand=Plus/Minus Query 1618 TGGCTTGTTGAGGGTGACGAAGGTCGCATTCTTAATAGCCCAGGCTTTTAGTGATGCATT 1677 ||||| | ||||| ||||| ||||| | | |||||||| || | | ||| || Sbjct 6873 TGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTT 6814 Query 1678 CTTTTCCTCTTCCAGATATTCCTTATATGATGATGTCGGTCCTTGATTGCAGAGGAAGAT 1737 ||| || || || ||| | || ||||| ||| | |||||| ||||||| |||||||| Sbjct 6813 CTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGAT 6754 Query 1738 AGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTCGCCAGTC 1797 ||||| || || ||||||| || || |||||| ||||| | | || |||| || Sbjct 6753 TGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATC 6694 Query 1798 TCTTTGGGCCCCCATAAACTCTTTAAAGTGTTTTAGATAGTGGGGATCTACGTCATCAAT 1857 |||| ||||||||| || || ||||| ||||||| ||| | ||||| |||| |||||| Sbjct 6693 ACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAAT 6634 Query 1858 GACGTTATACCAAGCATCATTTGAATACACCTTTGGGCTTAGATCAAGATGACCACACAA 1917 |||||| ||||| |||||||| ||| |||||||||| |||| |||||| || || Sbjct 6633 GACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAA 6574 Query 1918 ATAGTTGTGTGGACCTAATGACCTGGCCCACATGGTCTTGCCTGTTCTACTATCACCCTC 1977 || |||||||| |||||||| || ||||| || || || || |||||| ||||| || Sbjct 6573 GTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTC 6514 Query 1978 AATAACAATACTAATCGGTCTCCAAGGCCGCGCAGCGGCAG-CACACACGTTCTCAGAAA 2036 | ||| ||||| || |||| ||||| | ||| |||| |||| ||||| || || Sbjct 6513 TACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACA-ACGTTTTCTTCAA 6455 Query 2037 CCCACTCTTCAAGTTCTTCCGGAACTTGATCAAAAGAAGAAGATAAAAAAGGAGAAATAT 2096 |||| |||| ||| ||||| || | | ||| | | |||| ||||||||||| || Sbjct 6454 CCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACAT 6395 Query 2097 ACACTTCAGGCGGAGCCTGAAAAATCCTATCTAAATTACTGTTTAAATTATGAAAACCAT 2156 | | | |||| |||||||| || ||| |||| |||||| ||||| |||||||| | | Sbjct 6394 ATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAA-CGT 6336 Query 2157 AAACAA-AATCTCTAGGAGCTAGTTCCTTAAGTATAT-TAAGAGCCTCTTGTTTACTTCC 2214 ||| || ||||| | || | |||| ||| ||| | |||| || || |||| || Sbjct 6335 AAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCC 6277 Query 2215 TGAGTTAATTGCTCCGGCGTAAGCATCATTGGCTGTTTGTTGGCCTCCTC------TTGC 2268 || || | ||| | |||||| ||||||| || | |||||| || |||| |||| Sbjct 6276 AGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGC 6217 Query 2269 AGATCTTGCATCGATTTGAAATTCTCCCCATTCGAGGGTGTCGCCGTCCTTGTCGATGTA 2328 ||||||| |||| || || ||||||||||| || | || || |||| ||| ||||| || Sbjct 6216 AGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATA 6157 Query 2329 GGACTTGACATCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCT 2388 ||||| || | ||||||||||||| ||||||||||||| ||||||||||||| |||||| Sbjct 6156 CGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCT 6097 Query 2389 GTTAGGGGATATGAGGTCGAAGAATCGCTGATTCTGGCACTTGTACTTCCCTTCGAATTG 2448 | | || || | || |||||||||| | |||| ||| ||||||||||||||||||| Sbjct 6096 GGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTG 6037 Query 2449 CATAAGCACATGGAGATGAGGTTCGCCATTCTCGTGGAGTTCTCTGCAAATTTTAATATA 2508 |||||||| |||||| ||||||| | || || || |||||||||||| || || || Sbjct 6036 GATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTA 5977 Query 2509 TTTTTTATTGGTTGGGGTATTTA--ATTTGAGTATTTGTTCGAGTGCCTCTTCTTTGGAT 2566 ||| || || ||||||||||| ||||| || ||| ||| || || ||||| | Sbjct 5976 TTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTG--AGAGAGCTTCCTCTTTTGTA 5919 Query 2567 AGAGAGCATTTTGGGAAAGTGAGGAAATAATTTTT 2601 |||||||| | || | || || ||| |||||| Sbjct 5918 AGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8737859765550