Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014647.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq9745 627 1e-176 >seq9745 Length=7305 Score = 627 bits (694), Expect = 1e-176 Identities = 727/976 (74%), Gaps = 12/976 (1%) Strand=Plus/Minus Query 1602 CGAAGATCGCATTTTTGAGAGCCCAATTCTTTAATGAGGTGTTCTTGTCCTCGTCGAGGA 1661 |||||| |||||| |||||||||| ||| | | | |||||| || ||||| || | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1662 ATTCTTTATAACTGCTGTTTGGCCCAGGATTGCATAGGAAGATTGTCGGTATGCCGCCTT 1721 | ||||||||||| ||| || || |||||||| ||||||||||| || || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1722 TAATTTGAACTGGCTTCCCGTACTTGGTATTGGATTGCCAGTCCCTTTGGGTCCCCATAA 1781 ||| || || ||||| ||||| | |||| | ||||| || |||| || |||||| | Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1782 ACTCTTTAAAGTGCTTGAGGAAGTGCGGATCTACGTCATCAATGACGTTATACCACGCGT 1841 | || ||||| || || | | ||||||| |||| |||||||||||| ||||| || | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1842 CGTTACTATAGACTTTTGGGCTTAGATCCAAATGCCCACATAGGTAATTATGTGGGCCTA 1901 | || | || ||||||||||| ||| |||| || |||| |||||| |||||||||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1902 AAGACCTAGCCCACATTGTCTTCCCAGTACGACTATCACCCTCAATTACTATACTTTGAG 1961 | || |||||||| ||||| |||||||| | | ||||| || | |||||||| || Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1962 GTCTATGAGGCCGCGCAGCGGCGTCGACAACGTTCTCGGACACCCACTCTTCAAGTTCCT 2021 ||| ||||||| | ||| ||| |||||||| || ||||| |||| ||| || Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2022 CCGGGACTTGGTCGAAAGAAGAAGATGAAAAAGGAGAAACATAAACCTCCAATGGAGGTG 2081 |||| || | || || | | ||| ||||||||||||||| | | ||||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2082 TAAAAATCCTATCTAGATTAGCATTTAAATTATGAAATTGTAATACATAATCCTTGGGTG 2141 || ||| |||| | |||||||||||| ||||||| |||| |||||| || || Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2142 CTAATTCCTTAATGA-CGCTAAGAGCCTCTGATTTACTGCCTGAGTTAAGTGCTGCGGCG 2200 | |||| |||| | | ||||| || ||| |||| || || || || ||| | ||| Sbjct 6316 GTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG 6258 Query 2201 TAAGCGTCGTTTGCTGTCTGTTGTCCCCCTC------TTGCAGATCTTCCATCGATCTGA 2254 ||| | || || || | ||||| ||||||| |||||||||||||||| ||||| Sbjct 6257 TAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGG 6198 Query 2255 AATTCCCCCCACTCGAGAATGTCCCCGTCCTTGGCGATATAGGACTTGACGTCGGAGCTG 2314 ||||| ||||| || | | || |||| ||| ||||||| ||||| |||| ||||||| Sbjct 6197 AATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTG 6138 Query 2315 GATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTAGTTGGGGATACGAGGTCG 2374 |||||| ||||||||||||| ||||||||||||| |||||| ||||| || || || ||| Sbjct 6137 GATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCG 6078 Query 2375 AAGAATCTCTGATTCTTGCACTGGTATTTGCCTTCGAACTGGAGGAGCACGTGAAGATGA 2434 |||||||| | |||| |||| ||| || |||||||| |||| |||||||| ||| || Sbjct 6077 AAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGA 6018 Query 2435 GGTTCCCCATTCTCGTGAAGCTCTCTGCAGATTCTAATGTATTTTTTGTTTACTGGGGTT 2494 ||||||| || || ||| |||||||| || | |||||||| |||||||||||||| Sbjct 6017 GGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTA 5958 Query 2495 TGTAGATTTTG--TAATTGGGAAAGTGCTTCCTCTTTAGTAAGAGAGCATGTGGGATAAG 2552 | ||| ||||| ||||| || || ||||||||||| ||||||||||| |||||| | Sbjct 5957 TTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATG 5900 Query 2553 TGATGAAATAATTTTT 2568 | | ||| |||||| Sbjct 5899 TTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8622977347200