Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014707.1 Length=2736 Score E Sequences producing significant alignments: (Bits) Value seq9745 524 1e-145 >seq9745 Length=7305 Score = 524 bits (580), Expect = 1e-145 Identities = 713/987 (72%), Gaps = 12/987 (1%) Strand=Plus/Minus Query 1595 TGCATT-ATGTATAGCCCACGACCTCAGTGCTGAGTTCTTTTCCTCATCGAGGTATTCTC 1653 |||||| ||| | |||||| ||| | | |||| |||||| || || || || | ||| Sbjct 6849 TGCATTTATG-AGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTT 6791 Query 1654 TATAGCAGGAATTGGGCCCAGAATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTT 1713 |||| | || ||||| || | |||||| |||||||| ||||| || || ||||||| || Sbjct 6790 TATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTT 6731 Query 1714 GAACTGGTTTCCCGTACTTGGTGTTACTTTGCCAGTCCCTCTGGACCCCCATGAACTCTT 1773 || || || ||||| | | ||| ||||| || || | | |||||||||| || | Sbjct 6730 AAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCT 6671 Query 1774 TAAAATGCTTTAGGTAGTGGGGGTCTACGTCATCAATGATGTTATACCATGCATCATTTG 1833 ||||||| |||| || | || || |||| |||||||| ||| ||||| |||||||| Sbjct 6670 TAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGT 6611 Query 1834 AATATATCTTGCGACTCAGATCTAAATGTCCACACAGGTAATTGTGTGGTCCCAAAGACC 1893 || | || | || | ||| |||| || || | |||||||||||| || || || | Sbjct 6610 TGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATC 6551 Query 1894 TGGCCCACATTGTCTTGCCCGTACGACTATCACCCTCAATGACGATACTTTTAGGTCTCA 1953 | ||||| ||||| || || || | | ||||| || | || ||||| |||||| Sbjct 6550 TAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGT 6491 Query 1954 ATGGCCGCGCAGCGGGACCCATCACATTTTCAGAGGCCCATTCCTCTATGGCCTCTGGAA 2013 |||| | ||| || || || || ||||| |||| || | | ||| || | Sbjct 6490 GAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTA 6431 Query 2014 CTTGATCGAAGGAAGATGAAAGAAAAGGGGAAACATAAACCTCCATTGGAGGTGCAAAAA 2073 | | | || | | || | |||||| |||||||| | | ||||| || | Sbjct 6430 CGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATA 6371 Query 2074 TCCTATCTAAATTAGCATTAAGATTATGAAATTGTAAGACATAATCCTTTGGGGCTAATT 2133 || |||| ||||||||||| | ||||||| |||| |||||| |||||| | || Sbjct 6370 TCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTT 6311 Query 2134 CCCTAATGA-CTCTAAGAGCCTCTGACTTACTGCCTGTATTAATTGCTTTGGCGTAAGCA 2192 ||||||| | ||||||| || ||| ||| || | ||| | |||| |||||| || Sbjct 6310 CCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACA 6252 Query 2193 TCATTGGCTGACTGTTGTCCCCCTCTTG------CAGATCGTCCATCGATCTGAAACTCT 2246 ||||| || || ||||| |||||||||| |||||| |||||| ||||| || ||| Sbjct 6251 TCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCT 6192 Query 2247 CCCCAGTCGAGGGTGTCTCCATCCTTCTCCATATAGGACTTGACATCTGAGCTTGACTTA 2306 ||||| || | || ||||| | |||||| ||||| ||||| || | ||||| || ||| Sbjct 6191 CCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTA 6132 Query 2307 GCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAAC 2366 ||||||| ||||| ||||||||||||| |||||||||||| || || || |||||||| Sbjct 6131 CCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAAT 6072 Query 2367 CTGTTATTTTGGCACTTGTATTTTCCTTCGAACTGGATGAGCACGTGAAGATGAGGTTCC 2426 |||||||| ||| |||| || |||||||| ||||| |||||||| ||| |||||||| Sbjct 6071 CTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCC 6012 Query 2427 CCATTTTCGTGGAGCT-CTCTGCAGATTTTTATGTATTTTTTATTTACTGGGGTTTGTAG 2485 | ||||| || |||| ||||||| || || |||||||| || ||||||||||| | ||| Sbjct 6011 CTGTTTTCATG-AGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAG 5953 Query 2486 GTTCTGAAGTTGGGTGAGTGCCTCTTCTTTAGTAAGAGAGCATTTTGGATAAGTGAGAAA 2545 ||| |||| | ||| || || ||||| ||||||||||| | ||||| || ||||| Sbjct 5952 GTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAA 5893 Query 2546 GAAATTTTTGGCATATATTTGAAAACG 2572 | |||||| | | | || ||||||| Sbjct 5892 AATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8565913526520