Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014745.1 Length=2764 Score E Sequences producing significant alignments: (Bits) Value seq9745 513 2e-142 >seq9745 Length=7305 Score = 513 bits (568), Expect = 2e-142 Identities = 692/957 (72%), Gaps = 14/957 (1%) Strand=Plus/Minus Query 1654 GCCCAGGATTTGAGATGTGCGTTCTTCTCCTCTTCTAAATAGTCTTTATAGGATGAATTT 1713 |||||||| || | | ||||||||| || || || | | | |||||||| ||| || Sbjct 6836 GCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTG 6777 Query 1714 GGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAATTTGAACTGGCTTCCCG 1773 || ||||||||||| ||||||||||| || || || ||||||| || || ||||| ||| Sbjct 6776 GGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCG 6717 Query 1774 TATTTTGTGTTGCTTTGCCAGTC-CTTTTGTGCACCCATGAACTCCTTAAAGTGTTTCAG 1832 ||| || | || ||||| || |||||| || |||||||| |||||||| ||||| | Sbjct 6716 TATCTTCTATTATACTGCCAATCACTTTTG-GCCCCCATGAATTCCTTAAAATGTTTTAA 6658 Query 1833 ATAATGCGGGTCAACATCATCTATGACGTTATACCATGCGTCATTACTGAACACCTTTGG 1892 |||| |||| ||||| | ||| |||||||| ||||| || ||||| || || ||||| Sbjct 6657 ATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGG 6598 Query 1893 GCTCAGATCAAGATGGCCGCACAGATAATTATGAGGCCCAAGACTTCTGGCCCATACGGT 1952 ||| | |||| ||| ||||| | ||||| || || || | ||| ||||||| || Sbjct 6597 GCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGT 6538 Query 1953 CTTTCCTGTTCTGCTTTCCCCTTCAATTACTATACTAATCGGTCTACCTGGCCGCGCAGC 2012 || || ||||| || ||||| | |||||||| || |||| |||| | ||| Sbjct 6537 TTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGA 6478 Query 2013 GGCCTCCACGACGTTCTCCGCCGCCCATTCTTCAAGTTCTTCTGGAACTTGGTCGAACGA 2072 ||| ||| ||||| || | |||| |||| ||| || || || | || || | Sbjct 6477 GGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGT 6418 Query 2073 AGAAGACAAAAAAGGACAAACATAAGGAGCTGGAGGCTCCTGAAAAATCCTATCTAAATT 2132 | || | ||||||| ||||||| || || || |||| || ||| |||| ||||| Sbjct 6417 ACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATT 6358 Query 2133 ATTAATTAAATTATGATATTGTAAAACAAAATCTTTGGGAGCTAACTCCCTTA-TAACCC 2191 | | |||| ||||| | ||||| | ||||||| || | ||||| | || | | Sbjct 6357 AGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTC 6298 Query 2192 TAAGAGCCTCTGTCTTACTCCCTGCGTTAAGCGCTGCGGCGTAAGCGTCATTGGCTGTCT 2251 |||| || |||| ||| ||| | || || ||| | |||||| | ||||| || | | Sbjct 6297 TAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATT 6239 Query 2252 GTTGGCCTCCTC------TGGCAGATCGTCCGTCGATCTGGAATTCTCCCCATTCGAGTG 2305 |||| || |||| | ||||||| ||| || ||||||||||||||||| || | || Sbjct 6238 GTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTG 6179 Query 2306 TGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGT 2365 | ||||| | ||| ||||| || ||||| |||| ||||||||||||| ||||||| |||| Sbjct 6178 TATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGT 6119 Query 2366 TTGGATGGAAATGTGCTGACCTATTTGGGGAGACCAGGTCGAATAGTCTCTGATTTTGGC 2425 ||||||||||||||| |||||| |||| ||||| || ||||| | ||| | ||| || Sbjct 6118 TTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGC 6059 Query 2426 ACTTGAATTTCCCTTCGAATTGGAGAAGCACATGCAGATGAGGTTGGCCATCCTCGTGAA 2485 | || | |||||||||||||||| |||||| || ||| |||||| | | || ||| Sbjct 6058 ATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAG 5999 Query 2486 GTTCTCTGCAAATCTTGATGTATTTCTTGTTTGATGCTGTACTTA--TTTGCTGGAGTTG 2543 ||||||||||||||||||||||||||||||| || ||| ||| ||| | ||| Sbjct 5998 CTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTG 5939 Query 2544 CTCTAGGGCTTCCTCTTTGCTTAGAGAACATTTTGGGGAAGTTAGGAAAAAATTCTT 2600 || ||||||||||| | ||||| || | || | ||||| |||| ||| || Sbjct 5938 --AGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8654679469800