Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014794.1 Length=2627 Score E Sequences producing significant alignments: (Bits) Value seq9745 385 8e-104 >seq9745 Length=7305 Score = 385 bits (426), Expect = 8e-104 Identities = 709/1030 (69%), Gaps = 31/1030 (3%) Strand=Plus/Minus Query 1485 GAAGAGCGCATTCTTCAATGTCCAGTTCTTGAGACCTGTATTTTCCTCTTTGTCTAGGAA 1544 ||||| ||||| | | | |||| ||| | | ||| || | |||| ||| || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1545 GTCTTTATAACTGGCACCCTCACCTGGATTGCAAAGCACGATTGATGGAATCCCTCCTTT 1604 ||||||||||| | |||||||||||||| | ||||| || ||||| ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1605 AATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAG 1664 || || || ||||| |||||| | | ||| ||||||| || | | |||||||| | Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1665 TTCTTTCCAGTGCTTTAGCTTTAAATATTGCGGTGCGACGTCATCAATGACGTTATACTC 1724 ||| || | || |||| |||| |||| | |||| |||||||||||| ||| Sbjct 6675 TTCCTTAAAATGTTTTA------AATAACGCGGATCAACGTTATCAATGACGTTGTACCA 6622 Query 1725 CACTTCGTT--TGAAAAAACTCGGGAATTGAAGTCCAGGTGTCCACTAAGGTAATTGTGT 1782 | || || || | | ||| | | || || || | | |||||||||| Sbjct 6621 GGCATCATTGTTGTACGTTTTTGGGCTTATA--TCATAATGACCGCATAAGTAATTGTGT 6564 Query 1783 GGGCCTAATGCACGTGCCCACATCGTCTTCCCTGTCCTCGAATCACCTTCCACTATGATA 1842 |||||||||| | ||||| || || ||||| || || | |||||||| || | ||| Sbjct 6563 GGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATA 6504 Query 1843 CTAACTGGTCTGTCCGGCCGCGCAGCGGAACCTCCTCCAAAATAACCGTCCGCCCACTCT 1902 || | |||| || |||| | ||| || || || ||| | | || |||| ||| Sbjct 6503 CTCATAGGTCGGTGAGGCCTCCCAGAGGCAC-TCA--CAACGTTTTCTTCAACCCAGTCT 6447 Query 1903 TGCATCTCATCGGGAACGTTAGTGAATG-ACGAGAGTTGAAACGGAGGGACCCACGGTTC 1961 || | || || ||||| | |||| || || | ||| |||| || | | | Sbjct 6446 TGAAGAATCTCCGGTACGTTGTTAAATGTACTGGA-TACAAAAGGAGAAACATATATTGC 6388 Query 1962 CGG---AGCCTTTTGAAATATTCTGGTTGCGTTAGCAACCAGGTTGTGGTTCTGGAGGAA 2018 || ||||| | ||||| | |||||| | | || | | | Sbjct 6387 AGGTGGAGCCT---GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATA 6331 Query 2019 GAAATGTTGCGGTTGTTCTTCCCTTATTATTTGCAGAGCTGCCTCTGCTGAACCGGCGTT 2078 ||| || || ||| |||||| ||||| | | ||||| | || || | || Sbjct 6330 ATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATT 6271 Query 2079 CAACGCCTTGGCATATGAATCGTTAGCTGACTGCTGACCTCCTCTAG------CAGATCT 2132 | || | || || ||| ||||| || || ||||| ||||| | ||||||| Sbjct 6270 TAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCT 6211 Query 2133 GCCGTCGATTTGGAATTGCCCCCATTCGATGGTGTCTCCGTCCTTCTCGACGTAGGACTT 2192 || || || ||||||| ||||| || || || ||||||| |||||||| || ||||| Sbjct 6210 TCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTT 6151 Query 2193 GACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTACTGACCTGGTTGG 2252 |||| ||||||||||||| ||||||||||||| |||||||||||| |||||||||||| Sbjct 6150 CACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGG 6091 Query 2253 GGACACCATATCGAAGAATCTGTTATTCGTGCACTGGTACTTGCCTTCGAACTGTATGAG 2312 || || | |||||||||||||||||||||||| |||||| |||||||| || || || Sbjct 6090 AGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAG 6031 Query 2313 AACGTGGAGATGAGGCTCCCCATTTTCGTGTAATTCTCTGCAAACCTTGATGAACTTCTT 2372 ||||||||| |||| |||| ||||| || ||||||||||| ||||||| | ||||| Sbjct 6030 CACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTT 5971 Query 2373 GTTTACTGGAGTTGTTAGGTTTTG--TAATTGGGAAAGTGCTTCTTCTTTAGTAAGAGAG 2430 ||||||||| || |||||||||| |||||| || || |||| ||||| ||||||||| Sbjct 5970 GTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGAGAG 5913 Query 2431 CACTGGGGATATGTGAGGAAATAGTTTTTAGCTGAGACTTTGAAACGTTTAATCGATGGC 2490 || ||||||||||| || ||| ||||||| || | ||||| | ||| |||| Sbjct 5912 CAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACGAGAACTCGTTGGC 5853 Query 2491 ATTTTTGTAA 2500 || ||||||| Sbjct 5852 ATATTTGTAA 5843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8220360390180