Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014845.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq9745 479 5e-132 >seq9745 Length=7305 Score = 479 bits (530), Expect = 5e-132 Identities = 717/1014 (71%), Gaps = 20/1014 (2%) Strand=Plus/Minus Query 1576 GGTTGGGTGAGAGAGACGAATGTTGCATTCTTTAAAGCCCAGGATTTTAATGCTGAGTTC 1635 || |||||||| | |||| |||||| | | ||||||||| || | |||| |||| Sbjct 6872 GGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTC 6813 Query 1636 TTATCCTCGTCTAAGAACTCTTTATAGCTTGCATTGGGCCCTGGATTGCAGAGGAAGATT 1695 ||||| ||||| | ||||||||||| |||| ||||| ||||||||||| ||||||||| Sbjct 6812 TTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATT 6753 Query 1696 GTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTGTTTGATTGCCAGTCC 1755 || || || |||||||||| || || ||||| |||||| || | || | ||||| || Sbjct 6752 GTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCA 6693 Query 1756 CTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGGAAGTGTGGATCGACGTCATCAATG 1815 |||| ||||||||||||||| ||||| ||||||| | | ||||| |||| ||||||| Sbjct 6692 CTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATG 6633 Query 1816 ACGTTATACCAAGCGTCGTTACTGTACACCTTTGGGCTAAGGTCCAGATTCCCGCATAAA 1875 ||||| ||||| || || || ||||| |||||||| | || || |||||||| Sbjct 6632 ACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAG 6573 Query 1876 TAGTTATGTGGGCTTAAAGACCTAGCCCACATTGTTTTTCCAGTACGACTATCTTCCTCA 1935 || || ||||||| ||| || |||||||| |||||||| ||||| | | || | || Sbjct 6572 TAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCT 6513 Query 1936 ATTACTATACTTTGAGGTCTCAGGGGCCGCGCAGCGGCATCGACAACGTTCTCGCACGCC 1995 | |||||||| ||||| | |||| | ||| |||| |||||||| || || Sbjct 6512 ACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACC 6453 Query 1996 CACTCTTCAAGTTCTTCTGGAACTTGATCAAATGAAGANNNNNNNNNNNNAGAAACATAA 2055 || |||| ||| || || || | | ||||| | ||||||||| Sbjct 6452 CAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATAT 6393 Query 2056 GGAGCTGGAGGCTCCTGAAAATATC-TATCTAAATTAGAATTTAAATTATGAAATTG-AA 2113 || || || |||| |||||| |||| ||||||| |||||| ||||||| | || Sbjct 6392 ATTGCAGGTGGAGCCTG-GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAA 6334 Query 2114 GTAGAAAGTCTCTTGGGGCTTTTTCCTTCAGTATATTGAGGGCCTGAGCTTTGGACCCTG 2173 || | | ||| ||||| ||||||| | | ||| | | ||| | ||| ||||| | Sbjct 6333 ATA-ATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAG 6275 Query 2174 CGTTGATTGCCTCGGCATATGCGTCGTTGGCAGTTTGGCAACCTCCT------GTAGCTG 2227 || | || || || || | || || || | ||| ||| ||| || || | Sbjct 6274 AATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAG 6215 Query 2228 ATCTTCCATCGACTTGGAAAACTCCATGATCAAGGATGTCTCCGTCTTTCTCCATGTAGG 2287 |||||||||| | ||||| |||| ||||| | ||||||| ||||| || || | Sbjct 6214 ATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACG 6155 Query 2288 TTTGGACATCGCTTGAGCT---TTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACC 2344 | || | | ||||| |||| ||||||| ||||| ||||||||||||| ||||| Sbjct 6154 ACTTCACGTAG---GAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACC 6098 Query 2345 TAGTTGGGGAGGTGAGGTCGAAGAATCTATTGTTCCTGCACTGGAACTTTCCTTCGAACT 2404 | ||||| ||| || ||||||||||| || ||| |||| | |||| |||||||| | Sbjct 6097 TGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATT 6038 Query 2405 GGATGAGAACACGCAAGTGAGGATTCCCATCTTCATGAAGTTCTCTGCAGATTCTAATGA 2464 |||| || || | | |||| | || | ||||||| ||||||||| || | ||| Sbjct 6037 GGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGT 5978 Query 2465 ATTTTTTGTTTACTGGGGTTTGGAGATTT--AAGAATTGGGAAAGTGCTTCTTCTTTAGT 2522 |||| |||||||||||||| | || ||| || |||| || || ||||| ||||| || Sbjct 5977 ATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGT 5920 Query 2523 CAGGGAGCACTTGGGATAAGTGAGAAAATAATTTTTGGAATATATTTGAAAGCG 2576 || ||||| | |||||| || |||||| |||||| ||| | || |||| || Sbjct 5919 AAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8575424163300