Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014847.1 Length=2723 Score E Sequences producing significant alignments: (Bits) Value seq9745 536 2e-149 >seq9745 Length=7305 Score = 536 bits (594), Expect = 2e-149 Identities = 720/997 (72%), Gaps = 10/997 (1%) Strand=Plus/Minus Query 1555 AACGGTTGGGTGAGGAAGACGAATGCTGCATTTTTTAAAGCCCACGCTTTTAAAGCTGAG 1614 || || ||||||||||| |||| |||||||| | | |||||| | || | ||||| | Sbjct 6875 AATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCG 6816 Query 1615 TTCTTTGCCTCGTCCGAGAACTCTTTATAGCTTCCGTTGGGGCCTGGATTGCAGAGGAAG 1674 ||||| | ||||| ||||||||||| ||| |||||| ||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1675 ATTGTTGGTATGCCCCCTTTAATGTGAACTGGCTTCCCGTACTTTGTGTCTGATTGCCAA 1734 ||||| || || || ||||||| | || ||||| ||||| || | | | |||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1735 TCCCTTTGGGCCTCCATGAATTCTTTAAAGTGTTTCAGATAATGCGGGTCAACATCATCT 1794 || |||| |||| |||||||||| ||||| ||||| | |||| |||| ||||| | ||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1795 ATAATGGTGAACCACGCATCGTTTGAATACACTTTAGGGCTTAGATCTAGATGCCCACAC 1854 || | | || |||| ||||| || ||| ||| ||||||| ||| ||| || || Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1855 AAATGGTTATGTGGACCCAGTGATCTAGCCCACATCGTCTTCCCGGTACGACTATCTCCC 1914 || | || ||||| || | |||||||||||| || || ||||| || | | || || Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1915 TCAATCACTATACTTTGTGGTCTATGTGGCCGCGCAGCGGCGTCGACAACGTTCTCGGCA 1974 || | |||||||| |||| || |||| | ||| ||| |||||||| || || Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 1975 GCCCATTCCTCAAGTTCTTCCGGAACTTGGTCAAAAGAGGAAGAAGGAAAAGGAGAAACA 2034 |||| || | ||| ||||| || | || ||| | || ||||||||||||| Sbjct 6455 ACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACA 6396 Query 2035 TAAACCTCCACAGGAGGTGTAAAAATCCTATCTAAATTAGCATTTAAATTATGGAATTGT 2094 || | | |||| || ||| |||| |||||||||||||| |||| || || Sbjct 6395 TATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGT 6336 Query 2095 AATACATAATCTTTTGGAGCTAACTCCTTAATGA-CTCTAAGAGCCTCTGACTTACTGCC 2153 || |||||||||||| | ||| |||| | ||||||| || ||| ||| || Sbjct 6335 AAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCC 6277 Query 2154 TGCGTTAAGCGCTGCGGCGTCAGCGTCGTTGGCTGTCTGTTGTCCCCCTC------TAGC 2207 | || || ||| | |||| | | || || || | ||||| ||||||| | || Sbjct 6276 AGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGC 6217 Query 2208 AGATCGTCCGTCGATCTGAAACTCTCCCCACTCGAGAGTGTCCCCGTCCTTGTCGATGTA 2267 ||||| ||| || ||||| || |||||||| || | || || |||| ||| ||||| || Sbjct 6216 AGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATA 6157 Query 2268 GGATTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCT 2327 || || |||| ||||||||||||| ||||||||||||| ||||||||||||| |||||| Sbjct 6156 CGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCT 6097 Query 2328 GCTTGGGGAGACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCCTCGAACTG 2387 | |||| ||||| || |||||||||| | |||| ||| |||| ||||| ||||| || Sbjct 6096 GGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTG 6037 Query 2388 GATGAGCACGTGCAGATGAGGTTCCCCATTTTCATGAAGTTCTCTGCAGATTTTAATATA 2447 ||| |||||||| ||| ||||||||| ||||||||| ||||||||| || || || || Sbjct 6036 GATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTA 5977 Query 2448 ttt-ttttGAAGTGGGGGTTTGGAAATTCTTGATTTGGGAAAGTGCTTCTTCTTTGGTGA 2506 ||| || | | | ||||| | | || | || || || ||||| ||||| || | Sbjct 5976 TTTCTTGTTTACT-GGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAA 5918 Query 2507 GAGAGCACTTGGGATAAGTGAGGAAATAATTTTTGGA 2543 ||||||| | |||||| || || ||| |||||| || Sbjct 5917 GAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGA 5881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8524700767140