Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014894.1 Length=2724 Score E Sequences producing significant alignments: (Bits) Value seq9745 495 6e-137 >seq9745 Length=7305 Score = 495 bits (548), Expect = 6e-137 Identities = 700/985 (71%), Gaps = 22/985 (2%) Strand=Plus/Minus Query 1574 CGAAGATCGCATTTTTCACTGCCCAGTTCTTTAGTGCTGAGTTCTTATCCTCGTCTAAGA 1633 |||||| |||||| | | |||||| ||| | |||| ||||||||| ||||| | | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1634 ACTCTTTATAACTGCTGTTGGGACCAGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTT 1693 ||||||||||||| |||||| || |||||||| ||||||||||| || || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1694 TAATTTGAACTGGCTTTCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGA 1753 ||| || || ||||||||||| || | || | ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1754 ACTCTTTAAAGTGTTTGAGGAAGTGGGGATCTACGTCATCAATGACGTTATACCAGGCCT 1813 | || ||||| ||||| | | | ||||| |||| |||||||||||| |||||||| | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1814 CGTTACTGTAGATCTTTGGACTAAGGTCTAGATGCCCACACAAATAGTTATGTGGACCCA 1873 | || |||| | ||||| || | || ||| || || || || || ||||| || | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1874 GTGATCTAGCCCACATCGTCTTCCCGGTACGACTATCTCCCTCAATCACTATACTTTGTG 1933 |||||||||||| || || ||||| || | | || || || | |||||||| | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1934 GTCTAAGTGGCCGCGCAGCGGCGTCGACAACGTTCTCGGCAGCCCATTCCTCAAGTTCTT 1993 ||| | |||| | ||| ||| |||||||| || || |||| || | ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 1994 CCGGAACTTGATCAAAAGANNNNNNNNNNNNNNNNNNNNNATAAACCTCCACAGGAGGTG 2053 |||| || | | ||| | | |||| | | | ||||| Sbjct 6436 CCGGTACGTTGTTAAATG------TACTGGATACAAAAGGAGAAACATATATTGCAGGTG 6383 Query 2054 TA------AAAATCCTATCTAAATTAGCATTTAAATTATGGAATTGTAATACATAATCTT 2107 | || ||| |||| |||||||||||||| |||| || |||| |||||||| Sbjct 6382 GAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTT 6323 Query 2108 TTGGAGCTAACTCCTTAATGA-CTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGCGCT 2166 |||| | ||| |||| | ||||||| || ||| ||| || | || || ||| Sbjct 6322 TTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCT 6264 Query 2167 GCGGCGTAAGCGTCGTTGGCTGTCTGTTGTCCCCCTCTAG------CAGATCGTCCGTCG 2220 | |||||| | || || || | ||||| |||||||| | |||||| ||| || Sbjct 6263 TCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCC 6204 Query 2221 ATCTGAAACTCTCCCCACTCGAGAGTGTCCCCGTCCTTGTCGATGTAGGATTTGACGTCG 2280 ||||| || |||||||| || | || || |||| ||| ||||| || || || |||| | Sbjct 6203 ATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAG 6144 Query 2281 GAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGAGACC 2340 |||||||||||| ||||||||||||| ||||||||||||| ||||||| |||| ||||| Sbjct 6143 GAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACA 6084 Query 2341 AGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCCTCGATCTGGATGAGCACGTGC 2400 || |||||||||| | |||| ||| |||| ||||| |||| ||||| |||||||| Sbjct 6083 AGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGG 6024 Query 2401 AGATGAGGTTCCCCATTTTCATGAAGTTCTCTGCAGATTTTAATATAttt-ttttGAAGT 2459 ||| ||||||||| ||||||||| ||||||||| || || || ||||| || | | | Sbjct 6023 AGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACT 5964 Query 2460 GGGGGTTTGGAAATTCTTGATTTGGGAAAGTGCTTCTTCTCTTGTGAGAGAGCACTTGGG 2519 ||||| | | || | || || || ||||| ||| |||| |||||||| | ||| Sbjct 5963 -GGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGG 5905 Query 2520 ATAAGTGAGGAAATAATTTTTGGAA 2544 ||| || || ||| |||||| ||| Sbjct 5904 ATATGTTAGAAAAATATTTTTAGAA 5880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8527870979400