Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014902.1 Length=2727 Score E Sequences producing significant alignments: (Bits) Value seq9745 201 2e-48 >seq9745 Length=7305 Score = 201 bits (222), Expect = 2e-48 Identities = 245/334 (73%), Gaps = 0/334 (0%) Strand=Plus/Minus Query 1655 TCCTCGTCGAGGAACTCTTTATAAGAAGATTTGTTGCCTGGGTTGCAGAGAAAGATTGTG 1714 || ||||| || |||||||||||| || ||| ||||| ||||| || ||||||||| Sbjct 6809 TCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTG 6750 Query 1715 GGGATACCACCTTTAATCATTGTGGGCTTTCCGTATTTGACGTTACTTTGCCAGTCACGT 1774 || || || ||||||| ||||||||||||| | ||| ||||| |||| | Sbjct 6749 GGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTT 6690 Query 1775 TGTGCGCCCATGAATTCTTTGAAATGTTTCAAATAATGCGGATCGACGTCATCAATGACG 1834 | || ||||||||||| || |||||||| |||||| ||||||| |||| |||||||||| Sbjct 6689 TTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACG 6630 Query 1835 TTATACCATGCATCGTTGGAATACACTTTCGGACTAAGGTCCAAATGGCCGCAGAGATAA 1894 || ||||| ||||| ||| ||| ||| || || | || |||| ||||| | ||| Sbjct 6629 TTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAA 6570 Query 1895 TTGTGCGGCCCCAATGCACGAGCCCATGTCGTCTTCCCAGTACGACTATCACCTTCAATG 1954 ||||| || || |||| | ||||||| | || |||||||| | | |||||||| | Sbjct 6569 TTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACA 6510 Query 1955 ACAATGCTAATCGGTCTTTCTGGCCGCGCAGCGG 1988 || || || || |||| | |||| | ||| || Sbjct 6509 ACTATACTCATAGGTCGGTGAGGCCTCCCAGAGG 6476 Score = 134 bits (148), Expect = 2e-28 Identities = 262/382 (69%), Gaps = 20/382 (5%) Strand=Plus/Minus Query 2198 GCTTCGGCATAAGCGTCGTTTGCAGATTGCTTACCTCCTCG---ACTTG---ATCGACCA 2251 ||||| || ||| | || || || ||||| | ||| |||| | ||| ||| ||| Sbjct 6266 GCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCA 6207 Query 2252 TCAATTTGGAATTCTCCATGATCAACGACGTCTCCGTCTTTTTCCATGTATTTTTTAACA 2311 || || ||||||||||| ||||| ||||||| || || || || || || Sbjct 6206 TCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACG 6147 Query 2312 TCTGAGCTACTTTTAGCTCCCTGAATGTTCGGATGGAAATATGTTGACCTGGTTTCGGCA 2371 | ||||| |||| ||||||| ||||| |||||||||| ||||||||||||| | Sbjct 6146 TAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAG 6087 Query 2372 TGGAGATCGAAGAACCTCTGGTTTTTGCACTGGAATTTTCCTTCGAATTGAAGCAGAACA 2431 ||||||||||| || | || |||| | | || ||||||||||| | || || Sbjct 6086 ACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACG 6027 Query 2432 TGTAAGTGAGGAATGCCATCTTCATGAAGTTCTCTGCAAATTCGGATGAATTTCTTGTTT 2491 || | |||| | | ||||||| |||||||||||| |||| ||||||||||| Sbjct 6026 TGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTT 5967 Query 2492 ACAGGAGTTGATATAG----CGAGTAATTGCTCCAAAGCAGCTTCC---TTTGACAGAGT 2544 || || || || ||| || |||||| | || ||||||| |||| |||| Sbjct 5966 ACTGGGGT--ATTTAGGTTTTGAATAATTG----AGAG-AGCTTCCTCTTTTGTAAGAGA 5914 Query 2545 GCATCTGGGATATGTAAGGAAA 2566 ||| ||||||||| || ||| Sbjct 5913 GCAGTGGGGATATGTTAGAAAA 5892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8537381616180