Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014968.1 Length=2799 Score E Sequences producing significant alignments: (Bits) Value seq9745 453 2e-124 >seq9745 Length=7305 Score = 453 bits (502), Expect = 2e-124 Identities = 638/896 (71%), Gaps = 17/896 (2%) Strand=Plus/Minus Query 1721 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTACCGTA 1780 |||||||||||| |||||||| ||||| || || ||||||| || || ||||| ||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1781 TTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTA 1840 | | | || ||||| || | | ||||||||||||||| ||||| || |||| || Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATA 6655 Query 1841 TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTACACTTTTGGGCT 1900 | || | |||| |||||||||||| ||||| ||| ||| ||||| ||||||||| Sbjct 6654 ACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCT 6595 Query 1901 TAAGTCTAAATGGCCACACAGATAATTATGTGGTCCTAAAGATCTAGCCCATACTGTTTT 1960 || || |||| || || | ||||| ||||| ||||| ||||||||||||| |||||| Sbjct 6594 TATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTT 6535 Query 1961 ACCTATTCTACTTGGGCCTTCTATAACAATACTAATGGGCCTATCTGGCCGCGCAGCGGA 2020 || ||||| ||||||| ||| ||||| || || | | |||| | ||| || Sbjct 6534 CCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGC 6475 Query 2021 ATCCATGACATTTTCAGCAGCCCATTCGCTGATAATGTCAGGAACATTATTGAAAGAAGA 2080 | || || ||||| || |||| || | ||| || || || || || || | | Sbjct 6474 ACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACT 6415 Query 2081 AAGTGAAAAAGGAGAAGAATATACAGANNNNNNNNNNNNNAAAATCCTATCTAAATTANN 2140 | |||||||||| ||||| | || ||| |||| |||||| Sbjct 6414 GGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGC 6355 Query 2141 NNNNNNNNTATGATATTGGAAA--ATAAATTTCTCAGGGAGTTTCTCCCTGATTATTTGT 2198 ||||| | | ||| |||| || | ||| |||| ||||| ||||| | | Sbjct 6354 ATTTAATCTATGAAAACGTAAATAATAATCTTTT--GGGCGTTTTTCCCTAATTATCTCT 6297 Query 2199 AAGGCAGCTTCTTTGCTGCTTGCATTTAGGGCCTCTGCTGCTGCGTCTTTAGCAGTCTGC 2258 ||||| ||| ||| | | ||||||||| ||||| | || ||||| | || Sbjct 6296 AAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGT 6237 Query 2259 TGGCCTCCTCTAG------CAGATCTGCCGTCGACCTGGAACTCACCCCATTCCAATGTG 2312 || || ||||| | ||||||| || || | |||||| || ||||| || | ||| Sbjct 6236 TGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTA 6177 Query 2313 TCTCCGTCCTTATCGACGTAGGACTTGACGTCGGAGCTGGATTTAGCTCTCTGGATATTG 2372 ||||||| ||| |||| || ||||| |||| ||||||||||||| ||| ||| || || Sbjct 6176 TCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTT 6117 Query 2373 GGATGAAAGTGAGTCGACCTTGATGGGGAAACAAGGTCGAAGAATCTCTGATTCGTGCAT 2432 ||||| || || || ||||| | ||| || ||||| ||||||||||| | |||||||||| Sbjct 6116 GGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCAT 6057 Query 2433 TGGTAGTTCCCTTCGAACTGCAACAACACGTGGAGATGAGGTTCCCCATTTTCATGCAGC 2492 ||| ||||||||||| || | | |||||||||| ||||||||| |||||||| ||| Sbjct 6056 GTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATG-AGC 5998 Query 2493 -TCTCTGCATATTTTGATGAATTTTTTGTTTGTTGGTGTGTTGAGATTAAGA--AGTTGG 2549 |||||||| || |||||| |||| |||||| ||| || || || || || | ||| Sbjct 5997 TTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTG- 5939 Query 2550 TCGAGAGCTTCTTCTTTGGTAAGAGAACATTGAGGATATGTAAG-GAAATAGTTTT 2604 ||||||||| ||||| |||||||| || || |||||||| || ||||| |||| Sbjct 5938 -AGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8760045118600