Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015043.1 Length=2679 Score E Sequences producing significant alignments: (Bits) Value seq9745 318 1e-83 >seq9745 Length=7305 Score = 318 bits (352), Expect = 1e-83 Identities = 658/962 (68%), Gaps = 44/962 (5%) Strand=Plus/Minus Query 1622 CCTGGATTGCAGAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTCCCGTAC 1681 ||||||||||| || | ||||| || || || ||||||| || || ||||| ||||| Sbjct 6773 CCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTAT 6714 Query 1682 TTGCAATTTGACTGCCAGTCTTTTTGTGCACCAATCAGCTCCTTCCAGTGCTTTAGCTTT 1741 | | ||| ||||||| || ||| || || || | ||||| | || |||| Sbjct 6713 CTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA---- 6658 Query 1742 AGATAATGCGGTGTGACATCATCGATGACGTTGTACAGGACATTATTGGAGTAGACCCTT 1801 |||| |||| || | ||| |||||||||||| | ||| |||| ||| || Sbjct 6657 --ATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTT 6600 Query 1802 GGATTGAAGTCCAGATGTCCAC-TAAGATAATTATGTGGGCCTAACGCACGAGCCCACAT 1860 || | | || ||| || | |||| ||||| ||||||||||| | | |||||| || Sbjct 6599 GGGCTTATATCATAATGACCGCATAAG-TAATTGTGTGGGCCTAATGATCTAGCCCATAT 6541 Query 1861 TGTCTTCCCTGTCCTTGAATCACCTTCGACGATGATACTCATAGGTCTCTCTGGCCGCGC 1920 ||| ||||| || || | |||||||| || | ||||||||||||| | |||| | | Sbjct 6540 TGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCC 6481 Query 1921 AGCGGCACTCCTCCCAAAATAGTCATCGGCCCACTCTTGCATTTCGTCGGGAACGTTAGT 1980 || ||||||| ||| | || || |||| ||||| | || || ||||| || Sbjct 6480 AGAGGCACTCA---CAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTT-GT 6425 Query 1981 GAAAGAGGAAAG--TGGAAACGGAGGGACCCA------AGGTTCCGGAGCACTGGCAAAT 2032 ||| | | | | ||| |||| || | |||| ||||| |||| ||| Sbjct 6424 TAAAT-GTACTGGATACAAAAGGAGAAACATATATTGCAGGT---GGAGC-CTGG--AAT 6372 Query 2033 AACTTTTGAACATGAGACTTGATTTTATCCAGA--TAAAGAACATAGTCCCTTGGTTGTT 2090 | | | | | || || || | | ||| | | |||| || || || |||| ||| Sbjct 6371 ATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAA--TAATCTTTTGGGCGTT 6314 Query 2091 CTTCTTTCAAAATCTGCAGTGCGTCTGATGCCGTTTCTGCGTTTAGAACCTTGGCGTATG 2150 ||| | | |||| | || ||| | | | | ||||| | | ||||| Sbjct 6313 TTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAA 6254 Query 2151 TGTCGTTAGCCGACTGGCAACCTCCTCTAGCACTT------CTGCCGTCGATCTGGAAAA 2204 || |||||||| || ||| ||||| | | || || || || |||||||| Sbjct 6253 CATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATT 6194 Query 2205 TTCCCCATTCAAGGGTGTCTCCGTCCTTGTCGACGTACGACTTGACATCTGAGCTCGATT 2264 |||||| |||| || ||||||| ||| |||| |||||||| || | ||||| |||| Sbjct 6193 CTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATT 6134 Query 2265 TAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTGGTTGGGGAGACCAGATCGAAGA 2324 || ||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||| Sbjct 6133 TACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGA 6074 Query 2325 ATCTCTGATTCTGGCACTTGAATTTACCCTCGAACTGGAGAAGCACATGGAGGTGAGGTT 2384 |||| | |||| ||| || | || || ||||| |||| |||||| ||||| |||||| Sbjct 6073 ATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTT 6014 Query 2385 CCCCATTTTCATGGAGC-TCTCTGGCGATTTTGATGAACTTCTTGTTTGTTGGGGTTTGA 2443 ||| ||||||| |||| |||||| || |||||| | ||||||||| |||||| | Sbjct 6013 CCCTGTTTTCAT-GAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTT 5955 Query 2444 ATGCATTG--TAATTGGGAAAGTGCTTCTTCTTTGGTTAAAGAGCACTTTGGATATGTGA 2501 | | ||| ||||| || || ||||| ||||| || | |||||| | |||||||| | Sbjct 5954 AGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTA 5897 Query 2502 GGAAATAATTTTTGGCATTTATTACAAACCGCTTGCTCGATGGCATTTTTGTAA-TAAAG 2560 | ||| |||||| | | || ||| || |||| |||||| ||||||| |||| Sbjct 5896 GAAAAATATTTTTAGAAGAAATGCGAAAACGAGAACTCGTTGGCATATTTGTAAGTAAAT 5837 Query 2561 GG 2562 || Sbjct 5836 GG 5835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8385211427700