Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015045.1 Length=2717 Score E Sequences producing significant alignments: (Bits) Value seq9745 255 1e-64 >seq9745 Length=7305 Score = 255 bits (282), Expect = 1e-64 Identities = 676/1010 (67%), Gaps = 53/1010 (5%) Strand=Plus/Minus Query 1575 TGAGGAAGACGAATTTCGCATT-ATGTAGAGTCCAGGCTTTGAGAGCTGAGTTTTCAGCT 1633 ||||||| |||| ||||| ||| |||| ||||| || | ||||| ||| | | || Sbjct 6865 TGAGGAATGCGAAGACTGCATTTATG-AGAGCCCAGGACTTAATAGCTGCGTTCTTATCT 6807 Query 1634 TTGTCGAGGAAATCTTTATAACTAGATCCCTCGCCTGGATTGCAGAGCACGATTGATGGA 1693 | ||| || || ||||||||||| || ||||||||||| || | ||||| || Sbjct 6806 TCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGC 6747 Query 1694 AGCCCGCCTTTAATTTGAACTGGCTTTCCGTATTTGCAATTTGATTGCCAGTC-CTTTTG 1752 | ||||||||||| || || |||||||||||| | | ||| | ||||| || |||||| Sbjct 6746 ATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTG 6687 Query 1753 AGCCCCAATCAATTCTTTCCAGTGCTTTAGCTTTAGATAATGCGGGCTTACATCATCAAT 1812 ||||| || ||||| || | || |||| |||| |||| || | |||||| Sbjct 6686 -GCCCCCATGAATTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAAT 6634 Query 1813 GACGTTGTACTCCAC-TAAGT-TTGAATAAACCCTAGAATTGAAATCTAGGTGCCCGC-T 1869 |||||||||| | | | | ||| || | | | | ||| || |||| | Sbjct 6633 GACGTTGTACCAGGCATCATTGTTG--TACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1870 AAGATAATTATGTGGGCCTAACGCACGAGCCCACATTGTCTTCCCCGTCCGACTATCGCC 1929 ||| ||||| ||||||||||| | | |||||| ||||| ||||| || | | || || Sbjct 6575 AAG-TAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACC 6517 Query 1930 CTCGATGATCAAACTTATGGGCCTAACAGGCCGCGCAGCGGCACCTCTCCCGAAATACTC 1989 || | | | ||| || || | ||||| | ||| ||||| || | | | || Sbjct 6516 TTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCAC---TCACAACGTTTTC 6460 Query 1990 GTCAGCCCATTCTTGCATCTCGTCAGGAACATTAGTGAAGGA---GGAGAGGTGAAACGG 2046 ||| |||| ||||| | || || || || | || | ||| | ||| || Sbjct 6459 TTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATAC---AAAAGG 6403 Query 2047 AGAAGCCCA------AGGCTCCGGAGCCTTAGAGAATATCCTGTCCAGGTTACTGGACAG 2100 |||| | | ||| ||||||| ||||||| | |||| ||| | Sbjct 6402 AGAAACATATATTGCAGGT---GGAGCCTG---GAATATCATATCCAAATTAGCATTTAA 6349 Query 2101 ATTGTGATACTG-AAATAAGAA-CTTTTCCGGTAACTTCTCCTTTATTATTTGCATCGCT 2158 | ||| | | |||||| || ||||| || || ||| | ||||| | | ||| Sbjct 6348 TCTATGAAAACGTAAATAATAATCTTTT--GGGCGTTTTTCCCTAATTATCTCTAAGGCT 6291 Query 2159 GCTTCTTTGGTCGATGCATTTAACGCCTCTGCTGCAGCGTCATTAGCTGTTTGCTTACCT 2218 ||| ||| | | | ||||| || ||||| | | |||||||| | ||| | ||| Sbjct 6290 GCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCC 6231 Query 2219 CCTCTAG------CAGATCTCCCGTCGATCTGGAATTCTCCCCATACAAGAATATCCCCG 2272 ||||| | ||||||| || || ||||||||||||||||| ||| |||| ||| Sbjct 6230 CCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCG 6171 Query 2273 TCTTTGTCGACGTAGGACTTGACGTCGGAGCTGGACCTAGCTCCTTGATAGTTCCCATGG 2332 | || |||| || ||||| |||| ||||||||| || |||| || ||| |||| Sbjct 6170 TGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGG 6111 Query 2333 AACTGTGTTGAACTATGTGGGGAGACCAAGTCGAAGAATCTTTTATTTTGGCAGTTGTAT 2392 || |||||||| || ||| ||||| | ||||||||||| ||||| ||| |||| Sbjct 6110 AAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTAC 6051 Query 2393 TTGCCTTCGAACTGGAGCAACACATGTAAATGAGGCTGCCCATCTTCGTGGAGC-TCTCG 2451 || |||||||| |||| | ||| || | | |||| | || | ||| | |||| |||| Sbjct 6050 TTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCAT-GAGCTTCTCT 5992 Query 2452 ACAGATCTTGACGTATTTCTTATTTGTTGGGGTTTGAAGGTTT--AGTAGTTGGGAAAGT 2509 || ||||||| ||||||||| ||| |||||| | |||||| | || ||| || || Sbjct 5991 GCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG- 5933 Query 2510 ACCTCCTCTTTGGATAGTGAGCATTTGGGATAAGTGAGGAAATAATTCTT 2559 | |||||||| | || ||||| | |||||| || || ||| ||| || Sbjct 5932 -CTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8505679493580