Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015046.1 Length=2680 Score E Sequences producing significant alignments: (Bits) Value seq9745 333 4e-88 >seq9745 Length=7305 Score = 333 bits (368), Expect = 4e-88 Identities = 679/1001 (68%), Gaps = 37/1001 (4%) Strand=Plus/Minus Query 1573 TGCGTTTTCCTCTTTGTCGAGGAAATCTTTATAGCTGGCCCCTTCACCTGGATTGCAGAG 1632 |||||| | |||| ||| || || |||||||| || | ||||||||||| || Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1633 CACGATTGATGGGATCCCGCCTTTAATTTGAACTGGCTTTCCGTATTTGCAATTTGACTG 1692 | ||||| || ||||||||||||| || || |||||||||||| | | ||| |||| Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1693 CCAGTCTTTTTGGGCCCCAATTAGCTCTTTCCAGTGCTTCATCTTTAGATATTGCGGACT 1752 ||| || ||| |||||| || | || || | || || || ||| ||||| Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTT------TAAATAACGCGGATC 6646 Query 1753 GACATCATCGATGACGTTGTACTCCGCTTTATTCGAGTAAACCCTAGAATTGAAGTCCAG 1812 || | ||| |||||||||||| || | ||| ||| | | | | || Sbjct 6645 AACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATA 6586 Query 1813 GTGTCCGCTCAAATAATTATGTGGGCCTAACGCACGAGCCCACATCGTCTTCCCCGTCCG 1872 || |||| || ||||| ||||||||||| | | |||||| || || ||||| || | Sbjct 6585 ATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCT 6526 Query 1873 ACTATCACCCTCGACGATCAAACTGATAGGTCTCTCCGGCCGCGCAGCGGCACCCCTCCC 1932 | ||||| || || | | ||| ||||||| | |||| | ||| ||||| || | Sbjct 6525 AGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCAC---TCAC 6469 Query 1933 AAAATAATCATCGGCCCATTCTTGCATCTCGTCCGGGACGGCAGTGAAGGAGGAGAGTTG 1992 || | || || |||| ||||| | ||||| ||| | || | | | Sbjct 6468 AACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATAC 6409 Query 1993 AAACGGAGGAACCCA-----CGGCTCCGGAGCCTTCGAGAAAATCCGATCTAAATTGCTA 2047 ||| |||| ||| | | | | ||||||| ||| ||| ||| ||||| | Sbjct 6408 AAAAGGAGAAACATATATTGCAGGT--GGAGCCTG---GAATATCATATCCAAATTAGCA 6354 Query 2048 TTTAGATTATGAAATTG-AAATAAATATTTCTCCGGCAATTTCTCTCTGACTATTTGGAG 2106 |||| ||||||| | |||||| || | | ||| ||| || || | ||| | | Sbjct 6353 TTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTT-TCCCTAATTATCTCTAA 6295 Query 2107 CGCCGCTTCTTTTGAAGGGGCGTTTAAAGCCTCTGCGGCAACGTCGTTAGCTGTTTGGCA 2166 || ||| ||| || | |||| || |||||| ||| || ||||| | ||| Sbjct 6294 GGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTG 6235 Query 2167 ACCTCCTCTAGCACTT------CTCCCGTCGATCTGGAATTCTCCCCATTCGAGGGTATC 2220 ||| ||||| | | || || || || ||||||||||||||||| || | ||||| Sbjct 6234 ACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATC 6175 Query 2221 GCCGTCTTTGTCGATGTAGGACTTGACGTCGGACGATGATTTAGCTCCCTGAATGTTCGG 2280 |||| || ||||| || ||||| |||| ||| |||||| ||||||| ||||| || Sbjct 6174 TCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGG 6115 Query 2281 ATGGAAATGCGTTGACCGGGTTTGGGAGACCAAGTCGAAGAGTCTGTTATTCGTGCATTG 2340 ||||||||| ||||||| |||| | ||||| | ||||||| |||||||||||||||| Sbjct 6114 ATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGT 6055 Query 2341 GAACTTCCCTTCGAACTGGAGGAGGACGTGGAGATGAGGCTCCCCATCTTCGTGAAGCTC 2400 | ||||||||||||| |||| || ||||||||| |||| |||| | ||| ||| || Sbjct 6054 GTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTC 5995 Query 2401 TCTGCAAATTTTGATGAATTTTTTGTTGACTGGTGTTTGTAAGGCTTG--TAATTGGGAA 2458 ||||||||| |||||| |||| ||||| ||||| || | || | ||| ||||| || Sbjct 5994 TCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAG 5937 Query 2459 AGTGTTTCTTCTTTGGTTAATGAGCATCGTGGATACGTAATGAAATAATTTTTGGCTTTA 2518 || | ||| ||||| || | ||||| | ||||| || | ||| |||||| | | Sbjct 5936 AGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAA 5877 Query 2519 ATACAAAA---AGAACCCTTCCGTGGCATTTTTGTAAATAA 2556 || | ||| ||||| || |||||| ||||||| ||| Sbjct 5876 ATGCGAAAACGAGAAC---TCGTTGGCATATTTGTAAGTAA 5839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8388381639960