Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015124.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq9745 455 6e-125 >seq9745 Length=7305 Score = 455 bits (504), Expect = 6e-125 Identities = 688/977 (70%), Gaps = 15/977 (2%) Strand=Plus/Minus Query 1596 CGAAGATCGCATTCTTTATTGCCCAGTTTTTAAGTGCGCTGtttttttCTTCGTCCAAGA 1655 |||||| ||||| | | |||||| |||| || ||| || |||||||| | | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1656 ATTCTTTATAGCTGGAATTGGGGCCAGGATTGCAGAGGAAGATAGTGGGAATACCGCCTT 1715 | |||||||| || || ||||| || |||||||| |||||||| ||||| || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1716 TAATTTGAACAGGTTTCCCGTA-CTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATG 1774 ||| || || || || ||||| |||| | || ||||| || |||| |||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTC-TATTATACTGCCAATCACTTTTGGCCCCCATG 6678 Query 1775 AATTCTTTAAAGTGCTTTAGGTAATGCGGATCCACGTCATCGATGACGTTGAACCAGGCA 1834 ||||| ||||| || |||| ||| ||||||| |||| ||| ||||||||| |||||||| Sbjct 6677 AATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCA 6618 Query 1835 TCATTACTGTACACCTTTGGACTCAAATCTAAATGACCACATAAATAATTGTGTGGACCC 1894 ||||| ||||| ||||| || | ||| ||||||| ||||| ||||||||||| || Sbjct 6617 TCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCT 6558 Query 1895 AATGATCGGGCCCACATCGTCTTCCCCGTCCTGCTATCACCCTCTATGACTATACTTACT 1954 ||||||| ||||| || || ||||| || || ||||| |||| |||||||| | Sbjct 6557 AATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATA 6498 Query 1955 GGTCTCAAAGGCCGCGCAGCGGCACTGACAACGTTTTCTATAGCCCATTCATCAAGTTCT 2014 |||| ||||| | ||| |||||| |||||||||||| | |||| || | ||| Sbjct 6497 GGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATC 6438 Query 2015 TCAGGAACCTGGTCAAAAGNNNNNNNNNNNAATGGAGAAATATATTCCTCTATTGGAGGA 2074 || || || | || ||| | || ||||||| |||| | ||||| Sbjct 6437 TCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCC 6378 Query 2075 GTAAAAATCCTATCTAAATTACTATTTAAATTATGGAATTGTAAAACAAAATCTTTAGGA 2134 || ||| |||| |||||| |||||| |||| || ||||| | ||||||| || Sbjct 6377 TGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGG 6318 Query 2135 GCTTTCTCCCTTAATATATTGAGGGCCGATGCTTTGGACCCTGAATTGATTGCCTCGGCA 2194 ||| ||||| | ||| | | ||| | || ||| ||||| ||||| | || || || Sbjct 6317 CGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG 6258 Query 2195 TATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGCCGATCTTCCATCGATCTGG 2248 || | || || || ||||| ||| |||| | || ||||||||||| |||||| Sbjct 6257 TAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGG 6198 Query 2249 AAAACTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTATGTTTTAACATCTGTTGAG 2308 || |||| ||||| ||||||| || || || || | || || | ||| Sbjct 6197 AATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT---AGGAG 6141 Query 2309 CT---TTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTTGTTTGGGATATGAGG 2365 || |||| ||||||| ||||| ||||||||||||| |||||| ||| | || | || Sbjct 6140 CTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGA 6081 Query 2366 TCGAAGAATCTTTGATTTCTGCATTGGAACTTTCCTTCGAATTGGATGAGGACATGCAAG 2425 ||||||||||| | ||| ||||| | |||| |||||||||||||| || || || | Sbjct 6080 TCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGA 6021 Query 2426 TGAGGAGACCCATCTTCGTGTAATTCCCTGCAGATTCGAATGAATAATTTATTTGTTGGG 2485 |||| || | ||| || ||| ||||| || ||| || || ||| |||| Sbjct 6020 CGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGG 5961 Query 2486 GTTTCTAAGGCTTTAATTTGGGAAAGTGCTTCTTCTTTGGTGAGAGAACAGTGTGGGTAT 2545 || | || | || ||| || || ||||| ||||| || ||||| ||||| || ||| Sbjct 5960 GTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATAT 5901 Query 2546 GTGAG-GAAATAGTTTT 2561 || || ||||| |||| Sbjct 5900 GTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8578594375560