Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015317.1 Length=2782 Score E Sequences producing significant alignments: (Bits) Value seq9745 468 9e-129 >seq9745 Length=7305 Score = 468 bits (518), Expect = 9e-129 Identities = 641/894 (72%), Gaps = 13/894 (1%) Strand=Plus/Minus Query 1703 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1762 |||||||||||| |||||||| ||||| || |||||||||| || || ||||||||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1763 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTA 1822 | | | || | ||||| || | | ||||||||||||||| ||||| || |||| || Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATA 6655 Query 1823 TTGGGGGTTGACGTCATCAATGATGTTATACCAAGCACTGTTGCTATACACTTTTGGACT 1882 | || | |||| |||||||| ||| ||||| ||| ||| | ||| |||||| || Sbjct 6654 ACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCT 6595 Query 1883 CAGATCTAAATGACCACACAGATAATTATGTGGACCTAAAGACCTAGCCCAAACTGTTTT 1942 | ||| ||||||| || | ||||| ||||| ||||| || |||||||| | |||||| Sbjct 6594 TATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTT 6535 Query 1943 ACCTATCCTACTTGGGCCTTCTATTACAATACTTATGGGCCTATCTGGCCGCGCAGCGGA 2002 || | ||| ||||||| || ||||| || || | | |||| | ||| || Sbjct 6534 CCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGC 6475 Query 2003 ATCCATGACATTTTCAGCAGCCCAATCGCTGATAATGTCAGGAACATTATTGAAAGAAGA 2062 | || || ||||| || |||| || | ||| || || || || || || | | Sbjct 6474 ACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACT 6415 Query 2063 AGATAAAAAAGGTGAAGAATATACAGANNNNNNNNNNNNAAAAATCCTATCTAAATTACC 2122 |||| |||||| ||| ||||| | || ||| |||| |||||| | Sbjct 6414 GGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGC 6355 Query 2123 ACATAAATTGTGGTATTGAAAA--ATAAATTTCTCAGGGAGTTTTTCCCTGATAATTTGT 2180 | ||| | || | | ||| |||| || | ||| |||||||||| || || | | Sbjct 6354 ATTTAATCTATGAAAACGTAAATAATAATCTTTT--GGGCGTTTTTCCCTAATTATCTCT 6297 Query 2181 AAGGCAGCTTCTTTACTTCCTGAGTTTAAGGCCTCTGCTGCTGCGTCATTAGCCGTCTGC 2240 ||||| ||| |||| || || |||| ||| ||||| | |||||||||| || Sbjct 6296 AAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGT 6237 Query 2241 TGGCCTCCTCGAG------CAGATCTGCCGTCGACCTGGAATTCACCCCATTCAATTGTG 2294 || || |||| | ||||||| || || | ||||||||| ||||| |||||||| Sbjct 6236 TGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTA 6177 Query 2295 TCACCGTCCTTATCGACATAGGACTTGACATCGGAGCTGGATTTAGCTCTCTGGATATTG 2354 || |||| ||| |||| ||| ||||| || | ||||||||||||| ||| ||| || || Sbjct 6176 TCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTT 6117 Query 2355 GGGTGAAAGTGAGCCGACCTTGATGGTGATACAAGGTCGAAGAATCTCTGATTCGTGCAT 2414 || || || || | ||||| | ||| || ||||| ||||||||||| | |||||||||| Sbjct 6116 GGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCAT 6057 Query 2415 TGGTAGTTCCCTTCGAACTGCAATAGCACGTGGAGATGAGGTTCCCCATTTTCATGCAGC 2474 ||| ||||||||||| || | |||||||||||| ||||||||| |||||||| ||| Sbjct 6056 GTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATG-AGC 5998 Query 2475 T-CTCTGCATATTTTTATGAATTTTTTGTTGGTTGGGGTGTTGAGGTTACGAAGCTGGTC 2533 | ||||||| || || ||| |||| ||||| |||||| || ||||| ||| Sbjct 5997 TTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGA 5938 Query 2534 GAGAGCTTCTTCTTTGGTGAGAGAGCATTGGGGATATGTGAG-GAAATAGTTTT 2586 ||||||||| ||||| || |||||||| ||||||||||| || ||||| |||| Sbjct 5937 GAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8711743290480