Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015324.1 Length=2824 Score E Sequences producing significant alignments: (Bits) Value seq9745 217 3e-53 >seq9745 Length=7305 Score = 217 bits (240), Expect = 3e-53 Identities = 452/685 (66%), Gaps = 9/685 (1%) Strand=Plus/Minus Query 1758 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1817 |||||||||||| |||||||| ||||| || |||||||||| || || ||||||||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1818 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAGGTA 1877 | | | || | ||||| || | | |||||||||||||||||| || || |||| || Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATA 6655 Query 1878 TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTACTATATACTTTTGGGCT 1937 | || | |||| |||||||||||| ||||| ||| || | || ||||||||| Sbjct 6654 ACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCT 6595 Query 1938 TAGATCTAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCATACTGTTTT 1997 || ||| |||| || || || |||||||| ||||| || || || ||||||| |||||| Sbjct 6594 TATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTT 6535 Query 1998 GCCTATTCT-GCTTGGGCCTTCAATAACAATGGATATGGGTCTATCCGGCCGCGCAGCGG 2056 || |||| || | ||||| | ||| || || |||| | |||| | ||| || Sbjct 6534 CCCAGTTCTAGCCT-CACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGG 6476 Query 2057 CATCCATGACATTTTCAGCGGCCCAGTCGCTGATAATGTCAGGTACATTATTGAAAGANN 2116 || || || ||||| | ||||||| | ||| || ||||| || || || | Sbjct 6475 CACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTAC 6416 Query 2117 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCTATCTAAATTAC 2176 || |||| |||||| Sbjct 6415 TGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAG 6356 Query 2177 TACGTAAATTATGATATTGAAAAATAAAATCTATAGGAAGTTTCTCCCTAATTATTTGTA 2236 | ||| ||||| | | ||| | ||||| | || |||| ||||||||||| | || Sbjct 6355 CATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTA 6296 Query 2237 ATGCTGCTTCAGCAGAGCCTGCGTTTAAGGCCTCTGCTGCTGCATCATTAGCTGTCTGCT 2296 | |||||| ||| || | |||| ||| ||||| |||||||||| | || | Sbjct 6295 AGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTT 6236 Query 2297 GACCTCCTC------TAGCAGATCTTCCGTCGACTTGAAAAGTACCCCAGTCGATGTAAT 2350 |||| |||| | ||||||||||| || | || || ||||| || || || Sbjct 6235 GACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTAT 6176 Query 2351 CACCGTCCTTCTCGATGTAGGATTTGACATCGGATGATGATTTAGCTCCCTGGAAATTTG 2410 | |||| ||||||||| || || || || | ||| |||||| ||||||| | |||| Sbjct 6175 CTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTG 6116 Query 2411 GATGGAATTGGGTGGAGCT-GTTGG 2434 ||||||| || || || || ||||| Sbjct 6115 GATGGAAATGTGTTGACCTGGTTGG 6091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8839278522350