Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015397.1 Length=2566 Score E Sequences producing significant alignments: (Bits) Value seq9745 219 7e-54 >seq9745 Length=7305 Score = 219 bits (242), Expect = 7e-54 Identities = 242/319 (76%), Gaps = 9/319 (3%) Strand=Plus/Minus Query 2098 AGCATTTAACGCCTCTGCTGCAGCGTCGTTAGCCGTCTGCTGACCTCCTCTAG------C 2151 || ||||| || ||||| | | || ||||||| || ||||| ||||| | | Sbjct 6276 AGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGC 6217 Query 2152 AGATCGTCCGTCGATCTGGAATTGACCCCATTCGAGGATATCACCGTCCTTGTCGAGGTA 2211 ||||| ||| || |||||||||| ||||| || | |||| |||| ||| |||| || Sbjct 6216 AGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATA 6157 Query 2212 GTGACTTGACGTCGGAGCTAGATTTAGCTCCCTGAACATTCGGATGGAAATGTGTTGACC 2271 ||||| |||| |||||| |||||| ||||||| | || ||||||||||||||||||| Sbjct 6156 C-GACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACC 6098 Query 2272 TGGTAGGGGACGGTATATCGAAGAATCGGTTATTTGTACAGTTGTATTTCCCTTCAAACT 2331 |||| || || | ||||||||||| |||||| || || |||| |||||||| || | Sbjct 6097 TGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATT 6038 Query 2332 GGATAAGCACGTGGAGATGAGGCTCCCCATTCTCGTGGAGCT-CTCTTGCGACCTTGATG 2390 ||||||||||||||||| |||| |||| || || || |||| |||| | ||||||| Sbjct 6037 GGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATG-AGCTTCTCTGCAAATCTTGATG 5979 Query 2391 AATTTCTTGTTTGTTGGGG 2409 ||||||||||| ||||| Sbjct 5978 TATTTCTTGTTTACTGGGG 5960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8026977442320