Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015487.1 Length=2641 Score E Sequences producing significant alignments: (Bits) Value seq9745 297 3e-77 >seq9745 Length=7305 Score = 297 bits (328), Expect = 3e-77 Identities = 669/991 (68%), Gaps = 36/991 (4%) Strand=Plus/Minus Query 1496 GAAGACCGCATTCTTGATGGTCCAGTTCCTCAATGATGCGTTTTCATCTTTGTTGAGGAA 1555 |||||| ||||| ||| | |||| | | | | |||||| | ||||| || || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1556 ATCTTTATAGCTAGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCGCCTTT 1615 |||||||| || | || ||||||||||| | ||||| || ||||||||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1616 AATTTGAACTGGCTTGCCGTACTTACAATTTGATTGCCAGTCCTTTTGGGCCCCAATCAA 1675 || || || ||||| ||||| | | ||| | ||||| || ||| |||||| || || Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1676 TTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTC 1735 ||| || | || |||| ||| |||| | |||| |||||||||||| ||| Sbjct 6675 TTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTACCA 6622 Query 1736 CACTTCGTTTTGGTACACTCGAGCATTGAAATCCAGGTGTCCAC-TAAGATAATTATGTG 1794 | || || | |||| | | | | ||| || || | |||| ||||| |||| Sbjct 6621 GGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAG-TAATTGTGTG 6563 Query 1795 GGCCCAAAGCACGAGCCCACATTGTCTTCCCCGTTCTTGAATCACCTTCGACGATGATAC 1854 |||| || | | |||||| ||||| ||||| ||||| | |||||||| || | |||| Sbjct 6562 GGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATAC 6503 Query 1855 TTACTGGCCTCTCCGGCCGCGCAGAGGCACCACTTCCAAAATACTGATCAGCCCATTCTT 1914 | | || | | |||| | ||||||||| | ||| | | ||| |||| |||| Sbjct 6502 TCATAGGTCGGTGAGGCCTCCCAGAGGCAC---TCACAACGTTTTCTTCAACCCAGTCTT 6446 Query 1915 GCATCTCGTCCGGGACGTTAGTGAAGGAAGAGAGGGGAAACGGCGGAACCCACGGTTCCG 1974 | | ||||| ||||| | || | | | ||| || | ||| | | | | Sbjct 6445 GAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAG 6386 Query 1975 G---AGCCTTTGCGAAGATCCTCTCAAGGTTGGCCTTGAGATTGTGAAAATCTCTCACAA 2031 | ||||| ||| ||| | || | || || || | | |||||| | | Sbjct 6385 GTGGAGCCTG---GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAAT 6329 Query 2032 AGTCTCTAGGTTGTTCCTCCTTTAAAATTTGGAGTGCT--TGTTGCACTCCGCCGGCGTT 2089 | ||| | || ||| ||| | | || | | ||| |||| | || | | || Sbjct 6328 AATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACC--CAGAATT 6271 Query 2090 CAATGCCTTGGCGTATGAATCGTTAACAGTCTGCTTGCCTCCTCTAG------CAGATCT 2143 | || | ||||| ||| ||| | | || | || ||||| | ||||||| Sbjct 6270 TAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCT 6211 Query 2144 GCCGTCGATCTGGAATTCGCCCCATTCCAGGGTATCTCCGTCCTTCTCGACATAGGACTT 2203 || || ||||||||||| ||||| || | |||||||||| |||||||| ||| ||||| Sbjct 6210 TCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTT 6151 Query 2204 GACGTCGGAGCTTGATTCAGCTCCCTGATAATTTCCATGGAAATGGGATGATCTTGAAGG 2263 |||| |||||| |||| | ||||||| ||| ||||||||| | ||| || | || Sbjct 6150 CACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGG 6091 Query 2264 GGATACCAGGTCGAAGAATCTGTAATTCTGTGTTT-TGAATTTCCCTTCGAACTGGATGA 2322 || || || ||||||||||||| |||| ||| | || | ||||||||||| ||||| | Sbjct 6090 AGAGACAAGATCGAAGAATCTGTTATTC-GTGCATGTGTACTTCCCTTCGAATTGGATAA 6032 Query 2323 GCACGTGGAGATGAGGATTCCCATTTTCATGCAGCT-CTCTGCAGATCTTAATATATTTC 2381 ||||||||||| |||| | || |||||||| |||| ||||||| ||||| || |||||| Sbjct 6031 GCACGTGGAGACGAGGTTCCCTGTTTTCATG-AGCTTCTCTGCAAATCTTGATGTATTTC 5973 Query 2382 TTGTTTGTTGGGGTGTTTA--ATGCTAACAATTGGGAAAGTGTTTCCTCTTTGGTTAGGG 2439 |||||| |||||| |||| | || |||| || || | ||||||||| || || | Sbjct 5972 TTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAG 5915 Query 2440 AACACTGGGGATATGTGAG-GAAATAGTTTT 2469 | || ||||||||||| || ||||| |||| Sbjct 5914 AGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8264743361820