Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015488.1 Length=2611 Score E Sequences producing significant alignments: (Bits) Value seq9745 489 3e-135 >seq9745 Length=7305 Score = 489 bits (542), Expect = 3e-135 Identities = 676/939 (72%), Gaps = 19/939 (2%) Strand=Plus/Minus Query 1518 GTTTTTCTCTTCTCCGAGATACTCCTTATATGATGAATGGGGACCAGGATTGCAGAGGAA 1577 ||| || ||||| | ||| |||| ||||| ||| | ||| || |||||||| ||||| Sbjct 6816 GTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAA 6757 Query 1578 GATAGTGGGAATTCCTCCTTTAATTTGAATTGGCTTTCCGTATTTGCAGTTTGATTGCCA 1637 ||| ||||| || || ||||||| || || |||||||||||| | | || | ||||| Sbjct 6756 GATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCA 6697 Query 1638 GTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTCAGATAATGCGGATCAACGTCATC 1697 || |||| |||||||||||| || ||||| || || | |||| |||||||||||| ||| Sbjct 6696 ATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATC 6637 Query 1698 GATGACGTTATACCACGCATCGTTGGAGTATATCCTTGGGTTGAGATCGATATGACCACA 1757 |||||||| ||||| ||||| ||| ||| | ||||| | | ||| |||||| || Sbjct 6636 AATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCA 6577 Query 1758 TAAATAATTGTGAGGGCCCAGACTTCGGGCCCATATTGTTTTGCCCGTTCTTGATGGACC 1817 ||| |||||||| ||||| | || |||||||||||||| || ||||| | ||| Sbjct 6576 TAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACC 6517 Query 1818 TTCAACAATGATTGATATCGGTCTCAATGGCCGCGCAGCGGAATCGGAAATATTTTCGTT 1877 ||| |||| || || |||| |||| | ||| || | || ||||| | Sbjct 6516 TTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTC 6457 Query 1878 AACCCAATCGGACATGATTTCTGGGACATTGTTGAACGT---GGATAATTGAAACGGAGA 1934 |||||| || | || || || || ||||| || || ||||| ||| ||||| Sbjct 6456 AACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATAC---AAAAGGAGA 6400 Query 1935 AACCCATGGTTCTGGTGGTTTATGAAATATTTTCGTTATGTTGGACACCAGAT-TGTGAT 1993 ||| || | | ||||| || ||||| | | || | || || | ||| Sbjct 6399 AACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAG-CATTTAATCTATGAA 6341 Query 1994 ATTGAAGGACGAAATGTTTAGGTTGTTGCTCTTTAATAATCTGCATAGCCTCTTCTGCAG 2053 | | | ||| ||| || ||| || |||| |||| | || || | || Sbjct 6340 AACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAG 6281 Query 2054 ATTCTGCATTTAACGCCCTTGCATATGAATCGTTAGCAGATTGCTGACCTCCTCTAG--- 2110 | | | ||||| || ||| || ||| ||||| ||||| ||||| ||||| | Sbjct 6280 ACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAG 6221 Query 2111 ---CAGATCTGCCGTCGATCTGAAATTCTCCCCATTCAATTGTATCGCCGTCCTTGTCGA 2167 ||||||| || || ||||| ||||||||||| ||||||||||| |||| ||| |||| Sbjct 6220 TTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGA 6161 Query 2168 TGTAGGACTTGACGTCGGAGCTTGACTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTG 2227 | || ||||| |||| |||||| || ||| ||||||| ||||| ||||||||||||| || Sbjct 6160 TATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTG 6101 Query 2228 ACCTGGTTGGGGAAACCAAGTCGAAGAATCTGTTATTCGTGCACTGGTATTTCCCTTCGA 2287 |||||||||| || || | ||||||||||||||||||||||| ||| |||||||||| Sbjct 6100 ACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGA 6041 Query 2288 ACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGGAGTTCCGTGCATATTTTGA 2347 | ||||| |||||||| ||| ||||||||| |||||||| ||| |||| || |||| Sbjct 6040 ATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGA 5981 Query 2348 TGAACTTCTTGTTAACTGGAGTTGATAGGTTTTG--CAATTGGGAAAGAGCTTCTTCTTT 2405 || | |||||||| ||||| || ||||||||| |||| || |||||||| ||||| Sbjct 5980 TGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTT 5923 Query 2406 TGTTAGAGAGCATTTGGGGTATGTGAG-GAAATAGTTTT 2443 ||| |||||||| | ||| ||||| || ||||| |||| Sbjct 5922 TGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8169636994020