Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015490.1 Length=2640 Score E Sequences producing significant alignments: (Bits) Value seq9745 453 2e-124 >seq9745 Length=7305 Score = 453 bits (502), Expect = 2e-124 Identities = 709/1004 (71%), Gaps = 25/1004 (2%) Strand=Plus/Minus Query 1524 GtttttttCCTCTCCGAGATACTCCTTATATGATGAATGGGGGCCAGGATTGCAGAGGAA 1583 ||| || || || | ||| |||| ||||| ||| | ||| || |||||||| ||||| Sbjct 6816 GTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAA 6757 Query 1584 GATAGTGGGAATTCCACCTTTAATTTGAATTGGCTTTCCGTATTTGCAGTTTGATGGCCA 1643 ||| ||||| || || ||||||| || || |||||||||||| | | || | |||| Sbjct 6756 GATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCA 6697 Query 1644 ATCCCTCTGGGCCCCCATGAATTCTTTAAAGTGCTTGAGATAATGCGGATCTACGTCATC 1703 ||| || | ||||||||||||||| ||||| || || | |||| ||||||| |||| ||| Sbjct 6696 ATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATC 6637 Query 1704 GATGACGTTATACCATGCATCATTGGAGTATATCCTCGGGTTGAGATCTATATGTCCACA 1763 |||||||| ||||| ||||||||| ||| | | ||| | | ||| ||| || || Sbjct 6636 AATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCA 6577 Query 1764 TAGATAATTGTGAGGGCCCAGGCTACGGGCCCATATTGTTTTGCCCGTTCTTGATGGTCC 1823 || |||||||| ||||| | | |||||||||||||| || ||||| | || Sbjct 6576 TAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACC 6517 Query 1824 TTCAACAATGATTGATATAGGTCTCAACGGCCGCGCAGCGGCATCGGAAATATTATCGTC 1883 ||| |||| || ||||||| |||| | ||| |||| || || || || Sbjct 6516 TTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTC 6457 Query 1884 GACCCA--CTTCATCATTATTTCCGGTACATT----AATGAACGTGGACATTTGAAATGG 1937 ||||| ||| | | || |||||||| || |||| || |||| | ||| || Sbjct 6456 AACCCAGTCTTGAAGA--ATCTCCGGTACGTTGTTAAATGTAC-TGGATAC---AAAAGG 6403 Query 1938 AGGAACCCATGGTTCCGGAGGTTTATGGAATATTTTCGTTATATTTGAAACCAGATTGTG 1997 || ||| || | | || || |||||||| | | ||| | | | | || Sbjct 6402 AGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATG 6343 Query 1998 ATATTGGAGGACGAAATGTTGTGGTTGTTGTTCCTTAATGATCTGCATCGCCTCTTCTGC 2057 | | | | ||| || ||| ||| |||| |||| |||| | || || | Sbjct 6342 AAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTT 6283 Query 2058 AGAAGATGAATTCAACGCCGTCGCATATGTGTCGTTAGCAGATTGCTGACCTCCTCTAG- 2116 ||| ||||| | || || || || ||||| ||||| ||||| ||||| | Sbjct 6282 AGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGT 6223 Query 2117 -----CAGATCTGCCGTCGATTTGAAATTGTCCCCATTCGATTGTATCTCCGTCTTTGTC 2171 ||||||| || || || || |||| |||||| || ||||||||||||| || || Sbjct 6222 AGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTC 6163 Query 2172 GATGTAGGACTTGACGTCGGAGCTAGACTTAGCTCCCTGTATGTTCGGATGGAAATGTGC 2231 ||| || ||||| |||| |||||| || ||| ||||||||||||| ||||||||||||| Sbjct 6162 GATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGT 6103 Query 2232 TGACCTGGTTGGGGAAACCAAGTCGAAGAATCTGTTATTCTTGCACTGGTATTTCCCTTC 2291 |||||||||||| || || | |||||||||||||||||| |||| ||| |||||||| Sbjct 6102 TGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTC 6043 Query 2292 GAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCGTGGAGTTCTCTGCATATTTT 2351 ||| ||||| |||||||| ||| ||||||||| ||||| || ||||||||| || || Sbjct 6042 GAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTT 5983 Query 2352 GATGAACTTCTTGTTGACAGGAGTGTTTAGGTTTTG--TAATTGGGAAAGTGCCTCTTCT 2409 |||| | |||||||| || || || ||||||||||| ||||| || || || || ||| Sbjct 5982 GATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCT 5925 Query 2410 TTGGTTAGAGAGCACTTGGGGTATGTAATGAAATAATTCTTGGCATTTATTCTAAAACGC 2469 || || |||||||| | ||| ||||| | ||| ||| || | | || | |||||| Sbjct 5924 TTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACG- 5866 Query 2470 TGAACT-GATGGCATTCTCGTAATAAAAAGGCTGGACACCAATT 2512 ||||| | |||||| | |||| ||| || | | |||||||| Sbjct 5865 AGAACTCGTTGGCATATTTGTAAGTAAATGGAT-GTCACCAATT 5823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8261573149560