Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015627.1 Length=2601 Score E Sequences producing significant alignments: (Bits) Value seq9745 376 4e-101 >seq9745 Length=7305 Score = 376 bits (416), Expect = 4e-101 Identities = 668/965 (69%), Gaps = 31/965 (3%) Strand=Plus/Minus Query 1521 TCCTGGATTGCACAGCACGATTGATGGTATGCCACCTTTAATTTGAACTGGCTTGCCGTA 1580 |||||||||||| || | ||||| || || || ||||||| || || ||||| ||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1581 CTTACAGTTTGATTGCCAGTCCCTTTGGGCCCCTATGAGTTCTTTCCAGTGCTTTAGCTT 1640 | | || | ||||| || |||| |||||| |||| ||| || | || |||| Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTA---- 6659 Query 1641 TAAATAATGCGGAGCAATGTCATCAATGACGTTATACTCCACATCATTCGAGAA-GACCT 1699 ||||| ||||| ||| || |||||||||||| ||| ||||||| | | | | Sbjct 6658 --AATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTT 6601 Query 1700 TGGAATTGAAGTCGAGGTGACCACTCAAATAATTATGTGGGCCTAAAGCACGCGCCCACA 1759 ||| || | || ||||| | || ||||| ||||||||||| | | ||||| | Sbjct 6600 TGGGCTTATA-TCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATA 6542 Query 1760 TGGTTTTGCCTGTTCGAGAATCACCTTCAATTATGATACTAATAGGTCTCTCCGGCCGCG 1819 | ||||| || |||| || |||||||| | | ||||| ||||||| | |||| | Sbjct 6541 TTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCC 6482 Query 1820 CAGCGGAACTCCGACCAAAATACTCATCGGCCCA----TGAACTCATCTCGTCTGGAACG 1875 ||| || |||| ||| | || || |||| |||| ||||| || ||| Sbjct 6481 CAGAGGCACTCA---CAACGTTTTCTTCAACCCAGTCTTGAAGA-ATCTCC---GGTACG 6429 Query 1876 TTAGTAAAGGAGGAGAGTTGAAACGGAGGAACCCATGGTTCCGGAGCCTTCTGAAAAATC 1935 || |||| | | | ||| |||| ||| || | | || | ||| || ||| Sbjct 6428 TTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATC 6369 Query 1936 CGATGAGCATTGGCAACCAAATTATGATGTTGAAGGAAAAAATGTTGAGGCTGCTCTTCT 1995 || ||| ||| || ||||| | | || ||| || || | | ||| Sbjct 6368 ATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCC 6309 Query 1996 TTGATTATCATCAGTGCCTCTTCTGCAGAAGAGGCATTTAACGCCTTGGCATATGTATCG 2055 | |||||| | || || | ||| | ||||| || | || || ||| Sbjct 6308 CTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCA 6249 Query 2056 TTAGTAGATTGGCAGCCTCCTCTAGCACTT------CTGCCGTCGATCTGGAAATCTCCC 2109 |||| ||||| || ||||| | | || || || || |||||||| |||||| Sbjct 6248 TTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCC 6189 Query 2110 CATTGCAGTGTATCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTAGATTTAGCT 2169 || | | ||||||||||| ||| ||||| || ||||| |||| |||||| |||||| || Sbjct 6188 CAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCT 6129 Query 2170 CCCTGTATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGACCAGGTCGAAGAATCTG 2229 ||||||||||| ||||||||||||| |||||||||||| ||||| || |||||||||||| Sbjct 6128 CCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTG 6069 Query 2230 TTATTCGTGCATGTATATTTCCCTTCGAATTGTATGAGCACATGGAGATGAGGCTCCCCA 2289 |||||||||||||| || |||||||||||||| || ||||| |||||| |||| |||| Sbjct 6068 TTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTG 6009 Query 2290 TTCTCGTGAAGCTCTCTGCACACCTTGATAAACTTCTTGTTAACGGGTGTGTTTAGGTTT 2349 || || ||| |||||||| | |||||| | |||||||| || || || ||||||||| Sbjct 6008 TTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTT 5949 Query 2350 TG--TAATTGGGAAAGTGCGTCTTCTTTGGTGAGAGAGCACTTGGGATAAGTGATGAAAT 2407 || ||||| || || || || ||||| || |||||||| | |||||| || | ||| Sbjct 5948 TGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAA 5891 Query 2408 AGTTTTTGGCATTTATTCTAAAACGTTTAACT-GATGGCATTTTTGTAATATAAACGATG 2466 ||||| | | || | |||||| |||| | |||||| ||||||| || |||| Sbjct 5890 TATTTTTAGAAGAAATGCGAAAACG-AGAACTCGTTGGCATATTTGTAAGTAAATGGATG 5832 Query 2467 TCACC 2471 ||||| Sbjct 5831 TCACC 5827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8137934871420