Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015962.1 Length=2625 Score E Sequences producing significant alignments: (Bits) Value seq9745 376 4e-101 >seq9745 Length=7305 Score = 376 bits (416), Expect = 4e-101 Identities = 719/1049 (69%), Gaps = 28/1049 (3%) Strand=Plus/Minus Query 1483 GAAGACAGCATTCTTGAGTGTCCAGTTCCTGAGGGATGCGTTTTCCTCTTTGTTCAGGAA 1542 |||||| ||||| |||| | |||| | | | | |||||| | |||| || || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1543 ATCTTTATAGCTGGCACCCTCACCTGGATTGCAGAGCACGATTGATGGGATCCCTCCTTT 1602 |||||||| || | ||||||||||| || | ||||| || ||||| ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1603 AATTTGAACTGGCTTCCCGTACTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCAAGGAG 1662 || || || ||||| ||||| | | ||| ||||||| || ||| |||||| | || Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1663 CTCTTTCCAGTGCTTCAACTTTAAGTATTGCGGAGAGACGTCATCAATGACGTTATATTC 1722 || || | || || ||| || ||||| |||| |||||||||||| || | Sbjct 6675 TTCCTTAAAATGTTT------TAAATAACGCGGATCAACGTTATCAATGACGTTGTA--C 6624 Query 1723 CA--CTTCGTTCGAGTAAACCTTTGAGTTGAAGTCCAGGTGTCCACTCAGATAATTATGT 1780 || | || || ||| |||| | | | || || || | | ||||| ||| Sbjct 6623 CAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGT 6564 Query 1781 GGGCCTAAGGCACGAGCCCACATCGTCTTGCCTGTTCTTGAATCACCCTCAACTATGAGA 1840 |||||||| | | |||||| || || || || ||||| | ||||| || || | | | Sbjct 6563 GGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATA 6504 Query 1841 CTTATTGGACGATTTGGCCGCGCAGCGGAATCAAGCCCAAAATAACTATCGGCCCACTCT 1900 || || || || | |||| | ||| || || | ||| | || |||| ||| Sbjct 6503 CTCATAGGTCGGTGAGGCCTCCCAGAGG---CACTCACAACGTTTTCTTCAACCCAGTCT 6447 Query 1901 TGCATCTCGTCCGGAACGTTAGTGAAAG-AGGAGAGACGAAACGGAGGGACCCACGGTTC 1959 || | ||||| ||||| | || | | || || ||| |||| || | | | Sbjct 6446 TGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAA-GGAGAAACATATATTGC 6388 Query 1960 CGGAGCCTTCTTGAATATTCTGGTTGCGTTAGCAACCAGGTTGTGGTGTTGAAGGAAGAA 2019 || | || |||||| | |||||| | | || | | | | Sbjct 6387 AGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATA 6328 Query 2020 ATGTTGTGGTTGTTCTTCCTTTATGATTTGCAGAGCTTGCTCGGC-AGAGGCAGCATTCA 2078 || || ||| ||| |||| | || || | | ||| ||| ||| ||| ||| | Sbjct 6327 ATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCT-GCTGTTTTAGACCCAGAATTTA 6269 Query 2079 ACGCCTTTGCGTATGTATCGTTGACTGTTTGCTGACCTCCTCTTG------CAGATCTGC 2132 || | |||||| ||| || | | ||| ||||| ||||||| ||||||| | Sbjct 6268 GGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTC 6209 Query 2133 CGTCGATCTGGAATTCTCCCCATTCAATGGTGTCTCCATCCTTGTCGATGTAGGACTTAA 2192 | || ||||||||||||||||| ||||| || ||||| | ||| ||||| || ||||| | Sbjct 6208 CATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCA 6149 Query 2193 CGTCCGAGCTTGATTTAKCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGG 2252 ||| ||||| |||||| ||||||| ||||||||||||||||||| |||||||||||| | Sbjct 6148 CGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAG 6089 Query 2253 AGACCAGATCGAAGAATCTGTTATTCGTGCACTGGTACTTCCCCTCGAACTGGATGAGTA 2312 |||| |||||||||||||||||||||||||| ||||||||| ||||| ||||| || | Sbjct 6088 AGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCA 6029 Query 2313 TGTGGAGATGAGGCTCCCCATTCTCGTGAAGCTCTCTGCAGATTTTGATGAACTTCTTGT 2372 ||||||| |||| |||| || || ||| |||||||| || |||||| | ||||||| Sbjct 6028 CGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGT 5969 Query 2373 TTACTGGGGTTTTTAGGTTTTG--TAATTGGGAAAGTGCTTCTTCTTTAGTAAGAGAGCA 2430 |||||||||| ||||||||||| |||||| || || |||| ||||| ||||||||||| Sbjct 5968 TTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGAGAGCA 5911 Query 2431 CTGGGGATAAGTGAGGAAATAGTTTTTGGAGTTAATTCTAAATTTCTTAGGCGGTGGCAT 2490 |||||||| || || ||| ||||| || ||| | ||| | || |||||| Sbjct 5910 GTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACGAGAACTCGTTGGCAT 5851 Query 2491 TTTTGTAATAAGAGGGGTGTACACCGATT 2519 ||||||| | | || ||| |||| ||| Sbjct 5850 ATTTGTAAGTAAATGGATGT-CACCAATT 5823 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8214019965660