Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_016082.1 Length=2621 Score E Sequences producing significant alignments: (Bits) Value seq9745 342 8e-91 >seq9745 Length=7305 Score = 342 bits (378), Expect = 8e-91 Identities = 696/1027 (68%), Gaps = 25/1027 (2%) Strand=Plus/Minus Query 1472 GAAGATCGCATTCTTGATAGTCCAGTTTCTTAGTC-CTGCATTTTCCTCTTTGTCCAGGA 1530 ||||| ||||| ||| || |||| |||| | |||| || | |||| ||| || | Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGA-CTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1531 ACTCTTTATAGCTGGAACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTT 1590 |||||||||| || || || ||||||||||| | ||||| || || || |||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1591 TAATTTGAACAGGCTTACCGTATTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCA 1650 ||| || || ||||| |||||| | | ||| |||||||||| ||| |||||||| | Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1651 ATTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACT 1710 |||| || | || |||| ||| |||| | |||| |||||||||||| ||| Sbjct 6676 ATTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTACC 6623 Query 1711 CCACCGCGTT--TGAATAGACTCGACCATTGAAGTCCAGGTGTCCACTGAGATAGTTATG 1768 | | || || | | | | | | || || || | | || || || Sbjct 6622 AGGCATCATTGTTGTACGTTTTTGGGCTTATA--TCATAATGACCGCATAAGTAATTGTG 6565 Query 1769 TGGGCCTAACGCACGTGCCCACATCGTCTTCCCTGTTCTTGAATCACCTTCTACTATGAG 1828 ||||||||| | | ||||| || || ||||| ||||| | ||||||||||| | | Sbjct 6564 TGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTAT 6505 Query 1829 ACTTAATGGTCTATCTGGCCGCGCAGCGGAACCCCTACCAAAATACTCATCGGCCCATTC 1888 ||| | |||| | |||| | ||| || || | ||| | || || |||| || Sbjct 6504 ACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCA---CAACGTTTTCTTCAACCCAGTC 6448 Query 1889 TTGCATCTCGTCCGGAACGTTAGTGAATGAGGAGAGTTGAAACGGAGGTACCCACGGTTC 1948 ||| | ||||| ||||| | |||| | | ||| |||| || | | | Sbjct 6447 TTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGC 6388 Query 1949 CGGAGCCTTCTGAAATATCCGATGAGCATTGGCAACTAAATTGTGATGTTGAAGGAAGAA 2008 || | ||| |||||| || ||| ||| ||| | ||| | | | | Sbjct 6387 AGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATA 6328 Query 2009 ATGTTGAGGCTGCTCTTCCTTGATTATTTGCAGCGCCTCTTCTACAGAAGAGGCATTCAA 2068 || || || | | |||| | ||||| | | || || | ||| | ||| | Sbjct 6327 ATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAG 6268 Query 2069 TGCCTTGGCATACGTGTCGTTAGTCGATTGGCAGCCTCCTCTAGCACTT------CTACC 2122 || | || || || |||| |||||| || ||||| | | || || || Sbjct 6267 GGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCC 6208 Query 2123 GTCGATCTGGAATTCCCCCCATTCCAGTGTATCTCCGTCCTTGTCGATGTAGGACTTGAC 2182 || ||||||||||| ||||| || | ||||||||||| ||| ||||| || ||||| || Sbjct 6207 ATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCAC 6148 Query 2183 GTCGGAGCTAGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGA 2242 || |||||| |||||| ||||||||||||| ||||||||||||| |||||||||||| || Sbjct 6147 GTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGA 6088 Query 2243 GACCAGATCGAAGAATCTGTTATTCTTGCACTGGTATTTTCCCTCGAATTGTACAAGCAC 2302 ||| ||||||||||||||||||||| |||| ||| || || |||||||| | |||||| Sbjct 6087 GACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCAC 6028 Query 2303 ATGGAGATGAGGCTCCCCATTCTCATGAAGCTCTCTGCAAATTTTGATGAACTTCTTGTT 2362 |||||| |||| |||| || |||||| ||||||||||| |||||| | |||||||| Sbjct 6027 GTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTT 5968 Query 2363 AACTGGAGTTGCTAGGTTTTG--TAATTGGGAAAGTGCCTCTTCTTTTGACAGAGAGCAC 2420 ||||| || ||||||||| ||||| || || || || ||||||| |||||||| Sbjct 5967 TACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAG 5910 Query 2421 TGTGGATAAGTGAGGAAATAGTTTTTGGCTGAGACTTTAAAACGCTTAACCGATGGCATT 2480 || ||||| || || ||| ||||| | || | |||||| | || |||||| Sbjct 5909 TGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACGAGAACTCGTTGGCATA 5850 Query 2481 TTTGTAA 2487 ||||||| Sbjct 5849 TTTGTAA 5843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8201339116620