Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_016573.1 Length=2678 Score E Sequences producing significant alignments: (Bits) Value seq9745 273 4e-70 >seq9745 Length=7305 Score = 273 bits (302), Expect = 4e-70 Identities = 261/332 (79%), Gaps = 4/332 (1%) Strand=Plus/Minus Query 2172 TCTTCCGTCGATTTGGAATTCTCCCCATTCGATGGTGTCTCCGTCCTTCTCGACGTAGGA 2231 |||||| || || |||||||||||||| || || || ||||||| |||||||| || || Sbjct 6213 TCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGA 6154 Query 2232 CTTGACGTCGGACGATGATTTAGCTCCCTGAACGTTCGGATGGAAATGTGCTGACCTGGT 2291 ||| |||| ||| |||||| ||||||| | ||| ||||||||||||| ||||||||| Sbjct 6153 CTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGT 6094 Query 2292 TGGGGAGACCAGATCGAAGAATCTGTTATTTTTGCATTGGAATTTCCCCTCGAACTGGAT 2351 ||| ||||| |||||||||||||||||||| ||||| | | ||||| ||||| ||||| Sbjct 6093 TGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGAT 6034 Query 2352 AAGGACGTGGAGATGAGGCTGCCCATCTTCGTGAAGTTCTCTTGCGATTTTGATGAACTT 2411 ||| ||||||||| |||| | || | ||| ||| |||||| || |||||| | || Sbjct 6033 AAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTT 5974 Query 2412 CTTATTAGTTGGGATCGATAGGTTT--AATAATTGGGAAAGTGCTTCTTCTTTAGTAAGA 2469 ||| || |||| | ||||||| |||||||| || || |||| ||||| |||||| Sbjct 5973 CTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGA 5916 Query 2470 GAGCACTGTGGATAAGTAAGAAAATAATTTTT 2501 ||||| || ||||| || |||||| |||||| Sbjct 5915 GAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8382041215440