Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_016574.1 Length=2649 Score E Sequences producing significant alignments: (Bits) Value seq9745 118 2e-23 >seq9745 Length=7305 Score = 118 bits (130), Expect = 2e-23 Identities = 260/385 (68%), Gaps = 10/385 (3%) Strand=Plus/Minus Query 1522 GCATTGTTGATTGTCCAGGCTTTAAGTGATGAGTTTTCCTGCTTCTCCAGGAAA-TCTTT 1580 ||||| ||| | ||||| |||| | || ||| | | |||| || |||| ||||| Sbjct 6848 GCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTAT-CTTCGTCAAGAAACTCTTT 6790 Query 1581 ATAGCTGGCCCCCTCTCCAGGATTGCATAGCACGATTGATGGGATACCCCCTTTAATTTG 1640 ||| || | ||| |||||||| || | ||||| || || || ||||||| || Sbjct 6789 ATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTA 6730 Query 1641 AACAGGCTTGCCGTACTTGCAATTGGACTGCCAATCTTTTTGAGCACCAATCAATTCCTT 1700 || ||||| ||||| | | ||| |||||||||| ||| || || || |||||||| Sbjct 6729 AAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTT 6670 Query 1701 CCAGTGCTTTAGCTTTAGGTATTGCGGGCTGACATCATCGATGACGTTATACTCAACTTG 1760 | || |||| | | |||| || | ||| |||||||| ||| | | Sbjct 6669 AAAATGTTTTAAAT------AACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 1761 ATTTGAGTA-GACCCGGGAATTGAAATCTAAATGGCCACTCAAGTAATTATGTGGGCCTA 1819 ||| ||| | || || | ||| |||| || | |||||||| |||||||||| Sbjct 6615 ATTGTTGTACGTTTTTGGGCTT-ATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1820 ATGCTCTAGCCCACATCGTCTTACCAGTTCGAGAATCACCTTCAACTATTATACTTATGG 1879 ||| ||||||||| || || || ||||||| || |||||||| || | |||||| || | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1880 GCCTAACAGGCCGCGCAGCGGAACT 1904 | | ||||| | ||| || ||| Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACT 6472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8290105059900