Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_016575.1 Length=2727 Score E Sequences producing significant alignments: (Bits) Value seq9745 205 2e-49 >seq9745 Length=7305 Score = 205 bits (226), Expect = 2e-49 Identities = 629/957 (66%), Gaps = 33/957 (3%) Strand=Plus/Minus Query 1614 TTAATTG-TGCATTTTTAGGCTCCTCCAGATATTCTTTATAGGAGGATTGTGGACCAGGA 1672 ||||| | ||| || ||| || || ||| | |||||||| || | || || ||| Sbjct 6827 TTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGA 6768 Query 1673 TTGCAGAGGAAGATGGTGGGAATGCCTCCTTTAATTTGAACTGGTTTACTGTACTTGACG 1732 ||||| |||||||| ||||| || || ||||||| || || || || | ||| | Sbjct 6767 TTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTA 6708 Query 1733 TTACTCTGCCAGTTATGCTGGGCCCCCATGAATTCTTTAAAATGCTTTAGATAGTGCGGA 1792 ||| |||||| | | | ||||||||||||||| |||||||| |||| ||| ||||| Sbjct 6707 TTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGA 6648 Query 1793 TCTACGTCATCAATGACGTTATACCAGGCATTATTATTATAGACCTTCAATGATAGATCT 1852 || |||| |||||||||||| |||||||||| ||| || || || || ||| Sbjct 6647 TCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCA 6588 Query 1853 ATATGGCCACACATATAATTATGTGGCCCTAATGCACGGGCCCACTTTGTTTTACCACTC 1912 ||| || || | ||||| ||||| ||||||| | ||||| ||||||| ||| | Sbjct 6587 TAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTT 6528 Query 1913 CTGCTGGGCCCCTCTATGACAAT--TGATAATGGTCTATCTGGCCGCGCAGCGGGTCCCA 1970 || || |||| || || | ||| |||| | |||| | ||| || | || Sbjct 6527 CTAGCCTCACCTTCTACAACTATACTCATA--GGTCGGTGAGGCCTCCCAGAGGCACTCA 6470 Query 1971 TCACATTTTTTGATGCCCACTCCTTCATTGCTTCAGGAACATTGTCGAAAGAATTCGGAT 2030 || |||| | |||| || | | || || || |||| || | | | |||| Sbjct 6469 CAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACT-GGAT 6411 Query 2031 -CGTAAGGGGATACATATGGTGTTATCTTTGGTGC---AAAAATGTGATTAGCATTAGCA 2086 | |||| || ||||| | || ||| || || || || ||||||| Sbjct 6410 ACAAAAGGAGAAACATA---TATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCA 6354 Query 2087 GATATGTTGTGATATTGCAGAAAGAAGTTTTTCGGGTCTTTCTCTTTTATAACCTGCAAT 2146 || | ||| | | | | | | | ||| ||| ||| || | || | || || Sbjct 6353 TTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG 6294 Query 2147 GCGGAATCTTTATCCGCTGCATTTAATGCTTCTGCATAAACATC---TGCTAAACATTGT 2203 || | |||| | | | ||||| |||||||| |||||||| || | ||| Sbjct 6293 GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGA 6234 Query 2204 CCCTCACCT---CTTGCACTTCGTGGATCGACCTGGAATTGCCCATGGTCGATGAAATCG 2260 ||| | | | ||||| || | ||| | |||||||| || || || ||| Sbjct 6233 CCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCT 6174 Query 2261 CCTCCCTTCTCGATGTATGATTTGACATCTGACGAGCT---CTTAGCTCCCTGAATGTTT 2317 || ||||||||| || || || || | | ||||| ||| ||||||| |||||| Sbjct 6173 CCGTGCTTCTCGATATACGACTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTT 6117 Query 2318 GGATGGTAAGGTGTTGGCCTGGTTGGGGATTCCAGGTCGAAGAATCTCTGATTTGTGCAC 2377 |||||| || |||||| ||||||||| || | || ||||||||||| | ||| ||||| Sbjct 6116 GGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCAT 6057 Query 2378 TGGTATTTCCCTTCGAACTGTATGAGCACATGGAGATGAGGCTCCCCATCTTGGTGTAAC 2437 ||| ||||||||||| || || ||||| |||||| |||| |||| | || || Sbjct 6056 GTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCT 5997 Query 2438 TCTCTGCACA-CTCGAATGAATTTAATATTTGTTGGTGTACGAAGG---GAAATAAGTTT 2493 |||||||| | || | ||| |||| | ||| ||| ||| ||| ||||| || Sbjct 5996 TCTCTGCAAATCTTG-ATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAA--TT 5940 Query 2494 CTGCAGAGCTTCCTCTTTAGATATAGAACACTGAGGGTAAGTGAGGAAATAATTCTT 2550 | |||||||||||||| | | ||| || || || || || || ||| ||| || Sbjct 5939 GAG-AGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8537381616180