Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_016578.1 Length=2725 Score E Sequences producing significant alignments: (Bits) Value seq9745 228 1e-56 >seq9745 Length=7305 Score = 228 bits (252), Expect = 1e-56 Identities = 287/390 (74%), Gaps = 12/390 (3%) Strand=Plus/Minus Query 2162 TTAAGGACTTTGGCGTATGTGTCGTTAGCCGATTGGCAACCGCCTCTAGCACTT------ 2215 || ||| ||| ||||| || ||||||||||| ||| ||||| | | || Sbjct 6272 TTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGAT 6213 Query 2216 CTCCCGTCGATCTGGAATGTTCCCCATTCCAGAGTATCCCCGTCTTTGTCGACGTAGGAC 2275 || || || ||||||||| |||||| || | ||||| |||| || |||| || ||| Sbjct 6212 CTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGAC 6153 Query 2276 TTGACGTCGGAGCTCGACTTAGCTCCCTGTACGTTCGGATGGAAATGTGCTGACCGGGAC 2335 || |||| |||||| || ||| ||||||||| ||| ||||||||||||| ||||| || Sbjct 6152 TTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTT 6093 Query 2336 GGGGATACCAGGTCGAAGAATCTTTGATTCTGGCATTTGAACTTCCCCTCGAATTGGAGA 2395 || || || || ||||||||||| | |||| |||| || ||||||| |||||||||| | Sbjct 6092 GGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATA 6033 Query 2396 AGCACGTGGAGATGAGGCTCCCCATTATCGTGGAGC-TCTCTGGCGACCTTGATGAACTT 2454 |||||||||||| |||| |||| || || | |||| |||||| | ||||||| | || Sbjct 6032 AGCACGTGGAGACGAGGTTCCCTGTTTTCAT-GAGCTTCTCTGCAAATCTTGATGTATTT 5974 Query 2455 CTTGTTCGTCGGCGTTGCTAGGGCTTG--CAATTGGGAAAGTGCTTCCTCTTTGGTCAGG 2512 |||||| || || |||| ||| |||| || || ||||||||||| || || Sbjct 5973 CTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGA 5916 Query 2513 GAGCACTTTGGATAAGTGAGGAAATAATTT 2542 ||||| | ||||| || || ||| |||| Sbjct 5915 GAGCAGTGGGGATATGTTAGAAAAATATTT 5886 Score = 87.8 bits (96), Expect = 3e-14 Identities = 141/203 (69%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1604 GCTGAGTTTTCCTCTTTCTCGAGGAAGTCTTTATAGCTGGACCCTTCCCCTGGATTGCAA 1663 |||| ||| | |||| || || || |||||||| || || |||||||||||| Sbjct 6821 GCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAA 6762 Query 1664 AGCACGATTGATGGGATACCGCCTTTAATTTGAACGGGTTTCCCGTATTTGCAGTTACTT 1723 || | ||||| || || |||||||||| || || ||| || |||||| | | ||| Sbjct 6761 AGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATAC 6702 Query 1724 TGCCAGTCTCGTTGGGCCCCAACGAGTTCTTTCCAGTGCTTTAGCTTTAGGTAGTGCGGG 1783 ||||| || | || |||||| | || ||| || | | | |||| || |||| Sbjct 6701 TGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAAT------GTTTTAAATAACGCGGA 6648 Query 1784 GCAACGTCATCGATGACGTTGTA 1806 |||||| ||| ||||||||||| Sbjct 6647 TCAACGTTATCAATGACGTTGTA 6625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8531041191660